Zingiber officinale (ginger): 121982430
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Entry
121982430 CDS
T08725
Name
(RefSeq) small nuclear ribonucleoprotein SmD3b-like isoform X1
KO
K11088
small nuclear ribonucleoprotein D3
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121982430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121982430
03041 Spliceosome [BR:
zof03041
]
121982430
03032 DNA replication proteins [BR:
zof03032
]
121982430
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
121982430
Spliceosome [BR:
zof03041
]
Complex A
U1 snRNP components
Sm proteins
121982430
U2 snRNP components
121982430
Complex B
U1 snRNP components
121982430
U4/U6.U5 tri-snRNP components
121982430
Complex C
U2 snRNP components
121982430
DNA replication proteins [BR:
zof03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
121982430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
121982430
NCBI-ProteinID:
XP_042391412
LinkDB
All DBs
Position
5A:150065992..150069136
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AA seq
131 aa
AA seq
DB search
MSRSLGIPVKLLHEAAGHIVTVELKSGELYRGTMIECEDNWNCQLESITYTAKDGKVSQL
EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGSALGVGRGRAVAMRARAQAAGRGG
PPGRGVPPIRR
NT seq
396 nt
NT seq
+upstream
nt +downstream
nt
atgagccggagccttgggattccggtgaagctgctccatgaggcggcgggccacatcgtg
acggtggagctcaagagcggcgagctctaccgggggaccatgatcgagtgcgaggacaac
tggaactgccagctcgagagcatcacctacaccgccaaggatggcaaagtatcacagctc
gagcatgtttttatccgaggtagcaaagtaaggtttatggtcatccctgatatgttgaaa
aatgcaccaatgttcaagcgtttggatgcgagaattaaaggaaaaggatcagctcttggt
gttggccgtggtcgtgctgttgctatgcgtgctagggcacaagccgccggccgcggtggt
cctcctggtagaggcgttcctccgatcagaaggtag
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