Zingiber officinale (ginger): 121983042
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Entry
121983042 CDS
T08725
Name
(RefSeq) SKP1-like protein 1
KO
K03094
S-phase kinase-associated protein 1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03083
Polycomb repressive complex
zof04120
Ubiquitin mediated proteolysis
zof04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
121983042
04120 Ubiquitin mediated proteolysis
121983042
09126 Chromosome
03083 Polycomb repressive complex
121983042
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
zof04131
]
121983042
04121 Ubiquitin system [BR:
zof04121
]
121983042
03036 Chromosome and associated proteins [BR:
zof03036
]
121983042
Membrane trafficking [BR:
zof04131
]
Endosome - Lysosome transport
Acidification regulators
RAVE complex
121983042
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Adaptor protein
121983042
Cul7 complex
121983042
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
121983042
Centromeric chromatin formation proteins
Kinetochore proteins
CBF3 complex
121983042
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Skp1
Skp1_POZ
DarP
zf-C3Hc3H
Motif
Other DBs
NCBI-GeneID:
121983042
NCBI-ProteinID:
XP_042391964
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Position
5A:96269887..96270945
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AA seq
154 aa
AA seq
DB search
MDKKKITLLSSDGEAFEVDAAVAMVSKTIEHMVEFDCVEDTIPLPNVTSRILVKVIEYCQ
KHVLDDPAKSSDDKAELKSWDDNFVKVDQATLFELMLAANYMDIKGLLDLLCQSVADMIT
GKTPKEIRKTFSIKNDFTPEEEEKVRRESQWAFE
NT seq
465 nt
NT seq
+upstream
nt +downstream
nt
atggacaagaagaagatcaccctgttgagctccgatggcgaggcgtttgaggtggacgct
gcggtggccatggtgtccaagaccatcgagcacatggtcgagttcgactgtgtagaggac
acgatccccctccccaacgtcacctccaggatccttgtcaaggtcattgagtactgccag
aagcacgttctcgatgatcctgccaagtcttccgacgacaaggcagaactcaagtcttgg
gatgacaatttcgttaaagtcgaccaagccaccctattcgaacttatgttggctgcaaat
tacatggacattaaggggttgctggatttgttatgccaaagtgtagctgatatgattacg
ggaaagactcctaaagagattcgtaagacgttcagcatcaaaaacgacttcacccctgaa
gaagaggaaaaagttcgtagggaaagtcaatgggcgttcgaataa
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integrated database retrieval system