Zingiber officinale (ginger): 121983112
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Entry
121983112 CDS
T08725
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof00040
Pentose and glucuronate interconversions
zof01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
121983112
Enzymes [BR:
zof01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
121983112
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GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
121983112
NCBI-ProteinID:
XP_042392019
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Position
5A:complement(107352055..107353887)
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AA seq
433 aa
AA seq
DB search
MELGIKYSFFCLLFLANAALSAAHIAVYDDYWQKKAAEARNNTLNAYVPDPSTVVNHFNS
APLFDNGTRRGLAHRTETKGCFATNPIDRCWRCQKDWMNHRKRLATCAKGFGHSAIGGLH
GNFYVVTDPSDDDLMEPRPGTLRYGATRDAPLWIVFARDMVIRLQQELMINSYKTIDGRG
VNVHIAYGASLTVQFVQHVIIHNLHIHDIQPGAGGNIRDSETHWGIRTRSDGDGVSIFGS
SHVWVDHLSLSNCADGLIDAIQGSTAITISNCHLTRHNDVILLGANDAYTEDAKMQVTVA
YNHFGRGLVQRMPRCRFGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIGPPNQAAKE
VTHRDYGTEAEYNGWNWRSDRDLFMNGATFRQTGHQVTTMYSKIDYIKARPGSWAGRLTR
FSGSLKCRANVPC
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atggagttgggtatcaaatactccttcttctgcctcctcttcctagctaacgccgccttg
tcggctgcccacatcgccgtctacgacgattactggcagaagaaggcggcggaggctcgc
aataacacgctcaacgcctacgttcccgaccccagcaccgtcgtcaatcacttcaactcc
gccccccttttcgacaatggcacgaggagagggctggcgcatcgcacggagacgaagggc
tgcttcgccaccaacccgatcgatcggtgctggaggtgccagaaggactggatgaaccac
cgcaagaggctggcgacctgcgccaaggggttcgggcacagcgccatcggcgggctgcac
ggcaatttctacgtggtcaccgacccctccgacgacgacctgatggagcctcgtcccggc
accctccgctacggggccacccgcgacgccccgctctggatcgtcttcgcccgtgacatg
gtcatccgcctccagcaggagctgatgatcaacagctacaagaccatcgacggccgcggc
gtcaacgtgcacatcgcctacggcgcctccctcaccgtccagttcgtccaacacgtcatc
atccacaacctccacatccacgacatccagcccggtgccggcggcaacatccgcgactcc
gagacgcactggggcatccgcacccgcagcgacggcgacggcgtcagcatcttcggctcc
tcccacgtctgggtcgaccacctctccctgtccaactgcgccgacggcctcatcgacgcc
atccaaggctccaccgccatcaccatctccaactgccacctcacccgccacaacgacgtg
atcctattgggcgccaacgacgcctataccgaggacgccaaaatgcaggtcaccgtcgcc
tacaaccacttcggcagagggctggtgcagaggatgcccaggtgcaggttcggcttcttc
cacgtcgtgaacaacgactacacccactggctcatgtacgccatcggcggcagccagcac
ccgaccatcatcagccaaggcaacagatttatcggcccaccaaatcaagccgccaaggag
gtgacacacagggattacggaacggaagcagagtacaacgggtggaactggcgatcggac
agagacctgttcatgaacggagcaaccttccggcagacagggcatcaagtcacaaccatg
tactccaagatcgactacatcaaggcgaggccagggagctgggcagggcggctgactcgc
ttctcgggatccctcaagtgcagggccaatgtcccctgttaa
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