Zingiber officinale (ginger): 121983839
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Entry
121983839 CDS
T08725
Name
(RefSeq) nuclear pore complex protein NUP85-like
KO
K14304
nuclear pore complex protein Nup85
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121983839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121983839
03036 Chromosome and associated proteins [BR:
zof03036
]
121983839
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121983839
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
121983839
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleopor_Nup85
Motif
Other DBs
NCBI-GeneID:
121983839
NCBI-ProteinID:
XP_042392421
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All DBs
Position
5B:1110787..1120021
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AA seq
717 aa
AA seq
DB search
MPGRLSDPGADTIVPISLESRQPVVLSLRHGVSAPVFRVYISWSRGSLLHVACLRPPSLE
PDGAGDDEEEGGKVVEVRLGTGDGGISEAQMRRIAYGSVPPFVELQSWKNSLASLSMMSS
SSFRTEKWQYILEYSRKVNELLKTHQIPPDNVIEDPRIIVKLLKETSSLRAAWELMEIFF
IDKQSLSWLPERLVDWLEEYDSLVTRTDLTVYSKLVAMQKKLVDFKVIEDNPDYWEAVSS
ALAVGWLDTVAKLLRLHGSYQLDQLDDRETENGLVEAVAVLILTMPRLCPDLSSEKIGQC
YDTKPDFIKAWEKWRGQVSKLERSAYWVQCSHHQTREGLQKLLKILLGNISNLTSATCHW
MELLISHLLYTRPFIMGLEGLNNLAQKCQQLKPTAEYNGLMSLLMGILQESPEAVLAECS
RTYGPWMVAHGTELLAAGSDYADIQLHEERYNLGSISIEELHWLVYAQVLSSHPLTWQIA
STYLAQCPKQGLGLLEFLLYKQPLQHHQGIFKNLDLSRSYDLDNISASIMKIAGMHHWKH
GRKGFGIYWLQLARDEVRLNRIAQQLFEFIGRSLSDDSFQQWEGLIELLGTRVGSSGGLE
FLHKYRDLKRLLKQVEDGRAVNAARLAAESLVQLMKSPSTPQQFWLPLLYDSVSLLNWKA
QPLLRVSETNLLLNKLQDLSMAKMCPGFVDSNLPSHALSSVRLALAKNLGRAILEEC
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgcccgggcggctgtcggatccgggagcagacacaatagtgccgatatcgctggagtcc
cgacagccggttgtgctgtccctacgtcacggtgtttccgccccggtattccgcgtctac
atttcttggtcccgtggcagtcttctccatgtagcctgtctccgcccgccttctctggaa
cctgacggcgctggagacgatgaggaggaaggtgggaaagtggtggaggtgaggctggga
acgggcgatggcggaatcagtgaggctcagatgcgaaggatcgcgtatggttccgtccct
ccctttgtggagctccagagctggaagaattcgctcgcttctctgtccatgatgtcatcc
tcttcgttccgcacggaaaagtggcagtatattttagagtacagtagaaaagtaaatgag
cttctcaaaactcatcagattcctcccgacaatgtgatcgaggatccaaggataattgtg
aagcttcttaaggagacctccagtttgagagctgcttgggaactgatggagatatttttt
attgataaacaatcactatcatggcttccagagcgccttgtggattggttagaggagtat
gatagccttgtgaccaggactgacctcacagtttattcaaagctagtggctatgcaaaag
aaacttgttgatttcaaggttattgaagataaccctgattattgggaagcagtgtcatca
gcccttgcagttggttggcttgatactgtggcaaaattactgagactgcatggctcttac
caattggatcagcttgatgaccgtgagactgaaaatgggttagtagaggctgttgctgtt
ctcatcttaacaatgccacgcttgtgccctgacttatcttctgaaaagataggtcaatgc
tatgatactaaaccagattttatcaaggcttgggaaaaatggcgcggccaggtcagtaaa
ctagaacggagtgcatattgggtgcagtgtagccatcatcaaactcgggaaggcctccag
aagttgttaaagattttgctgggcaacataagcaatcttacatctgcaacttgtcactgg
atggagcttcttatctctcatttactttatacaagaccattcataatgggtttagaaggg
ctgaacaacttggctcaaaaatgtcagcagttgaagcctactgctgagtataatggtctt
atgagtcttctgatgggtatccttcaagagagccccgaggctgtgttagcagaatgctcc
agaacatatggtccttggatggttgcccatggaacagagttgttggcagctggcagtgat
tatgctgacatacaattgcatgaagagagatacaacctgggaagtatcagcattgaggaa
ctccattggcttgtatatgcccaagtcctttcgtctcatcccttgacttggcaaattgca
tccacatatctagcacaatgcccaaagcaaggattagggctgttagagtttttattgtat
aagcagcctcttcagcaccatcaagggatttttaaaaatcttgatctgagtcgttcctat
gatcttgataacatcagtgcgagtattatgaagattgctggtatgcaccattggaagcat
gggaggaaaggatttggaatttactggcttcaactagcccgtgatgaagttcgtctcaac
agaattgctcaacagctttttgaattcattgggaggtcactgtctgatgatagcttccag
caatgggagggattaatcgaactgctaggcacacgagtaggaagttcaggagggctggag
tttcttcataaatatcgggacttgaagagattacttaagcaggtggaagatggaagagca
gtgaatgctgctcggcttgctgctgaatcacttgtacagctgatgaaaagtccatccact
ccacaacaattctggcttccccttttgtacgattcggttagcctgttaaactggaaggcc
caaccactgttaagggtctcagaaacgaatctgttgctgaataagttgcaagatctctcc
atggcaaagatgtgccctggttttgtcgattccaacttgccgtctcatgctcttagttct
gtcagattagccctggccaagaatctcgggcgtgctattcttgaagaatgctga
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