Zingiber officinale (ginger): 121983969
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Entry
121983969 CDS
T08725
Name
(RefSeq) transcription elongation factor SPT6 homolog isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
121983969
03036 Chromosome and associated proteins [BR:
zof03036
]
121983969
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
121983969
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
121983969
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
SPT6_acidic
Spt6_S1
HTH_44
HHH_9
Tex_central_region
S1_RRP5
Tex_YqgF
Tex_N
Motif
Other DBs
NCBI-GeneID:
121983969
NCBI-ProteinID:
XP_042392619
LinkDB
All DBs
Position
5B:complement(4685414..4701433)
Genome browser
AA seq
2121 aa
AA seq
DB search
MKGKAVNSGKRDKFKGKRAVVVDADDGEEEEEVEGQDEYERGGFMADDIKEEEAQESDEE
MRSIKRKKNKKKRLLGKNFVLDEDDYELLEENKMSGFCPPKPGNGKFKRLKIGRDNELED
QQKAIGWHSQGGRSAEEKLKISLFGDDDDFADEAGQLEDRNVIGDEDEMAHFIVDEDVDN
AGALVRKLTKEKSHQVLCIASSTSQALEIFGDLDTSVKKRLNDEFEPFVLSENCMTQKDD
IIRERDIPERIQLSEDTTGPPPIDDQNVEEERNWIYDQLTDGRFSPLVGYDQVLKDINKD
NIDNVLKMMHVQKLDIPFISMYRKELCDSLLKDLDDGMQDGDEMKSMKWHKILWTVQSLD
RKWLLLQKRKSALCSYYTKHFEEESQRVDEETKLNLNNRVFDSVVLALNDAKSEREVDDI
DVKFNLCFPPCEDDTYDGQFKRPKRKSLHAVSYNARLWQITNKFGASSETFGSLLSLEKI
SDEVEDNIESPEEVAAKFTCSTFETPKDVLNGARHMAAVEISCEPNVKKHVRNIFMEKAV
VSTSPTPEGNLVIDAYHQLGGVKWLRNKPLMEFVDAQWLLVQKGEEDKLLHVSIKLPEDV
QMKLLSDASNCYLSKGVSKSAQLWNEQRRMILKDSFLTHILPSIEKEARSLLTAKAKNWL
CVEYGKQLWNKVLVGPFKRKHTDSDLENESEVRVLACCWGPGKPATTFVMLDSAGELVDV
LYAGSISVRSQAVTDQQRKRNDCQRLLKFMVNHQPHVICIGATNMACTQLRDDINEIIED
HPKELGQELENISVIFCDETLPCLYENSKLASEQLPGQPGIVKRAVALGRYLQNPLAMVA
TLCGQEKEILSWKFHPLEHFLTSDEKYEVVEQIMVDASNQVGVDINLAASHEWLFAPLQF
IAGLGPRKAFVLEKAFLRAGFISNRKEIPMGKILKMKVFVNAVGFLRVRQSGVASFSNLN
MDLLDDTRIHPESYELANNLAKDVYRDDALKEANDMDDMLEKVIEHVKKNPQKLEVFDID
EYANNIFDQYGKNKRETLYDIKMELLQGFRDYRAPFKEPSCEEEFAMLSGETDDTIPEGK
IVQVTVRHVQESQVICVFDSGLKGMVSSDDFSDEGFDYEKVHVGDILTCKIKYVNKNRHV
VYLTSKASDLQKGPYIDKRDPYYHEDKISMGSEMEKVRKNKEYANKPFRSRMIVHPCFQN
LTADEAIEFLSHKEPGVSIMRPSSKGPLFLTLTLKVFDGVFAHKEIAEKGKDHKDMTSLL
RLGKILTIDKESFEDLNEVMHRYVDPLVTHLKSMLGFHKFRKGNQKEVDDQLKAEKAANP
MRIVYCFGVSHEHPGTFILSYIRSANPHHEYVGVYPKGFRFRKKDFDSIHHLVAYFQKNI
DKPLLGEGPSVCTLGAEVSTENPTWVSSGDRESTDGRFNSRNTGNQNERGRGRGRGRGRG
RGRGRGRERGSDFGTDGSDNSGYEEMKGDTAGSGWGGCNIDGSNKGGWGGGDGGSGWGGN
TNSGTDGGGSWGSVEGNVSGQGRWVSSGDRNNSTDGVWAGNSSGGNSAGGWGNLGSGGGS
STGGWGNLRTGGDESSGTGSHRGSGDGSWGATDDVGGQGGRGTSGDVGMGGTDAVGAGNR
GSDGFTSGWGNQEAGGGVRNNSGDGHGENWCGGGAATGGDKSVVAGNYRGWSGRGSSTSN
WGEEGSSNNSRGRGRGRNSGRNNSGWGQGGNDITDLGSVGNSNAAGAASGWGSNQHQDNN
RGNDDAGGNWGSAPAATGGGYSDGTGSTGNWGAVGNDSSQGGRGSSNSGWGQIGNDITDP
VLDGSNNTGGTTSGWGRGSNRYGNNSKGSNDHDGDWSSGSAATGADSHRGQSGRGSSTGN
WGAEGNFSSHWDRGRGRGRGWNNSGRGHAGKDSTDSESTGNGNAMGAPGSWSCGINQGRG
SNHRSSNDADLASGSDGSGDKWTGAGSGRSCGGRSWRVGNNGGRRGRGRARDNSDRGSTD
GWDTGGGQGGEDKWGSNGGGDKGSGFADVNDISLSNSGRGGRRGSDGRPSWGDTNAGGHE
GSSCGWVGNNSGVGNGGGWGGGSCQGGNSSDGNDQTRSFADGNDDNAAGASGGGWGGNNN
GGSSKGGWGGNSDGGAGSGWN
NT seq
6366 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggcaaggcggtgaactctggaaagagagataagttcaaagggaaacgagccgtg
gtggttgatgcggatgatggcgaagaggaagaagaagtagaaggacaggatgagtatgag
cgaggtggatttatggcggatgacataaaagaggaagaagctcaggagagtgatgaagag
atgcgtagtataaaaaggaagaagaataagaagaaaaggcttttggggaagaactttgtt
cttgatgaggatgattatgagttgctcgaggaaaacaagatgagtggtttctgtccgccc
aaaccagggaatggtaaattcaagcgtctaaagattggaagggacaatgaattggaggat
caacagaaagcaattggttggcatagtcaaggtggccgttcagctgaagaaaaacttaag
attagcttgttcggtgatgatgatgattttgctgatgaagccggtcaattagaagatagg
aatgttattggtgatgaagatgaaatggctcattttattgtggatgaggatgtggataac
gctggtgcccttgtgagaaagttgacaaaagagaaatcacaccaagtgctttgcattgca
tcatctacttcacaagcgcttgagatatttggtgatcttgacacatctgtgaaaaaaaga
ttgaacgatgagtttgaaccttttgttctttcagagaattgtatgacacagaaggatgac
attatacgagagagagatattccagagagaattcagttgtctgaggatactactgggcca
ccacctatagatgatcagaatgtagaagaggagagaaactggatttatgatcagcttact
gatggcagattctctcctttagttggctatgatcaagtactcaaagatataaataaagac
aatattgataatgtcttaaaaatgatgcatgtgcaaaaacttgatattcctttcattagc
atgtatcgcaaggaattatgtgatagcctgttgaaggatcttgatgatggcatgcaggat
ggcgacgaaatgaaaagtatgaagtggcataagatactatggacagttcagtctttggac
agaaagtggttgttgcttcagaagaggaagagtgctctttgttcctattatacaaagcat
tttgaagaggaaagtcaaagagttgatgaagaaactaaactcaatttaaataacagagtt
tttgattcagtcgttttggcactgaatgatgcaaaatctgaaagagaggttgatgacatt
gatgtgaagttcaatctgtgttttcctccttgtgaagacgatacatatgatggacaattt
aagaggcctaaacgaaagtcattgcacgctgtttcctataatgctaggctgtggcagatt
actaacaagtttggtgctagttctgaaacatttgggtctctgctttcattagaaaagata
tctgatgaagttgaagataacatagaatctcctgaagaagttgctgcaaagtttacatgt
tctacgtttgaaactccaaaagatgtgcttaatggagccagacatatggcggctgtggag
atttcatgtgagcctaatgttaaaaaacatgtgcgcaatattttcatggagaaggctgtt
gtgtcaacaagtcctactcctgaaggaaatcttgtgattgatgcctatcatcaacttggg
ggtgtgaaatggctgcgcaataagcctttaatggagtttgtggatgctcaatggttgctt
gtccaaaagggtgaagaagataaactgcttcatgtcagcattaaactacctgaagatgtc
caaatgaaattattaagtgatgcttcaaattgttatctgagcaaaggtgtcagtaaatct
gctcagttatggaatgagcagcggaggatgatattgaaagattcatttctcactcatatt
ttgccatcaatagaaaaggaagctcgctcattgttgacagctaaggcgaagaattggctt
tgtgtggaatatggaaagcaattgtggaataaggtcttggttggtcctttcaagaggaag
cacactgatagtgatttggagaatgaatctgaggtaagagttctggcctgttgttgggga
cctggaaagccagcaactacttttgtcatgttagattcagcaggagaactggtggatgtg
ctatatgctggttcaattagtgttcgatcccaggctgttactgatcaacagagaaagagg
aatgactgccaacgactcctgaagttcatggtcaatcaccaaccgcatgttatctgcata
ggagcaacaaacatggcttgcacacagctaagggatgacattaatgaaataattgaggat
catccaaaagaacttggtcaagaattggaaaatatttctgttatcttttgcgatgaaact
ttgccttgtctttatgagaattcaaagcttgcttcagaacaactacctggtcaaccaggc
attgtgaaacgtgctgtggcacttggacgctatctgcaaaaccctttggctatggtggct
actctttgtggacaagaaaaagaaatactgtcatggaaatttcatcccctggaacatttc
cttacttctgatgagaagtatgaggttgttgagcagattatggttgatgcttctaaccaa
gtcggtgtggatataaacctagcagcaagtcatgaatggctttttgctcctctacaattt
attgctggtcttggtccacgaaaagcatttgtcttagaaaaagcatttttgagggctgga
tttatttcgaatcgcaaagagattcctatgggaaagattcttaaaatgaaggttttcgtc
aatgctgttggatttttacgggtaagacagagtggggtggcttcttttagtaacctcaat
atggaccttttggatgacactagaattcatccagagtcgtatgaactggcaaataatttg
gccaaggatgtctatcgcgatgatgctctaaaggaggcaaatgacatggatgatatgctg
gagaaggtgattgagcatgttaaaaaaaatccacagaagcttgaagtgtttgatattgat
gagtatgcaaacaatatatttgaccagtatggaaaaaacaaaagggagacactttatgat
ataaagatggagcttctacaaggatttcgggactatcgggcaccttttaaagaaccaagt
tgtgaggaggagtttgctatgctctctggagaaacagatgataccattccagaagggaaa
attgttcaagtgacagttcgccatgtacaggagagtcaagtcatttgtgtatttgattct
ggtttaaaagggatggtgtcctctgatgacttttcagatgaaggatttgattatgagaag
gtgcatgtaggggatatacttacatgcaagattaagtatgtgaataagaataggcatgtg
gtttacttgacatccaaagctagtgacctgcaaaaaggcccttatattgataagcgagat
ccttattaccatgaagataaaattagtatgggcagtgaaatggagaaggtccggaagaac
aaggaatatgcaaataaacctttcagatcaaggatgattgttcatccctgttttcagaat
ctgacagctgatgaggcgattgagttcctttctcataaagaacctggtgtgagtattatg
cgtcccagttccaaagggccattatttttgacgttgactttgaaagtttttgatggagta
tttgctcacaaagaaatagctgagaaaggaaaagatcacaaagatatgacaagcttactt
cggctggggaagatactaacaattgataaagagtcctttgaagatctcaatgaggtcatg
caccgatatgttgatccactggtaacccacttgaaaagcatgcttgggtttcacaaattc
agaaaagggaatcagaaagaggttgatgatcaactgaaggcagagaaggcagcaaaccca
atgcggatagtgtactgttttggagtttctcatgagcatcctgggacttttattttatcc
tatattagaagtgcaaatccacatcatgagtatgttggggtgtatcccaaaggtttcagg
tttcggaaaaaggattttgatagcattcatcacttagttgcatattttcagaagaacata
gacaagccactacttggtgagggcccatctgtatgtacacttggtgcagaggtatcaaca
gaaaatcctacatgggtatcctctggtgatcgggaatctacagatggaagatttaactct
agaaatactggcaatcaaaatgaacgagggcgaggtcgtggtcgtggacgtggacgtggg
cgtgggcgtgggcgtggtcgtgaaagaggaagtgattttggtactgatggaagcgacaac
agtggttatgaggaaatgaagggtgatactgcaggttctggctggggtggttgtaacata
gatggctccaacaaaggtggctggggtggcggagatggtggtagtggttggggtggcaac
acgaattcaggtactgatggtggtgggagttggggaagtgtggaaggtaatgtaagtggc
caagggcgatgggttagctcaggagatagaaacaatagtactgatggtgtctgggctggg
aatagcagtggtggcaacagtgctggtggctgggggaatctgggatctggtggtggcagc
agtactggtggctgggggaatctgagaactggtggtgatgagtcttctgggactggcagt
cacaggggcagtggcgatggtagttggggtgcgacggatgatgttggtggccaaggagga
aggggaacttcaggagatgtaggaatgggtggtactgatgctgtcggggctggaaataga
ggcagcgatggcttcacaagtggctggggcaatcaagaagcaggtggtggagttagaaac
aatagcggggatggccatggtgagaattggtgtggtggtggtgccgcaactggtggtgac
aagtcagttgtggctggcaattacagaggttggagcggaagaggcagttctactagtaac
tggggagaagaaggtagtagcaataacagcaggggcagaggcaggggaaggaatagtggt
aggaacaacagtgggtggggacaaggtggaaatgatattactgatcttggctcagttggt
aatagcaatgctgctggtgccgcaagtggctggggaagtaaccaacatcaggacaacaat
agaggcaatgatgatgctggtgggaattggggtagtgcgcctgctgctactggtggtggt
tattcagatgggactggcagtactggtaattggggagcagttggtaatgatagtagccag
gggggcagaggtagtagcaacagtgggtggggacaaattggaaatgatattactgatcct
gtcctggatggtagtaacaatactggtggcaccacaagtggctggggaagaggaagtaac
cgatatgggaataacagtaaaggcagcaatgatcatgatggggattggagtagtggttct
gctgcgactggtgctgacagtcacagaggccagagtggacgaggcagtagcactggcaac
tggggagcagaaggcaattttagtagccactgggacagaggcagggggaggggcagaggt
tggaacaacagcgggcggggacatgctgggaaggatagtactgattctgaatctactggt
aatggcaatgctatgggtgccccaggttcatggagctgtggaatcaaccaaggcaggggc
agcaaccatagaagcagtaatgatgcagatcttgcaagtggttctgatggtagcggcgac
aaatggactggggctggcagtggaagaagctgtggtggtcgtagctggagagttggtaac
aatggtggccgcaggggccgaggcagagccagggataacagtgacagaggtagcacagat
ggctgggacactggaggcggccagggcggggaggataagtggggtagtaatggtggtggg
gataagggaagtggttttgctgacgttaatgacatatcactaagcaacagtggtcggggt
ggaagaagaggcagtgatggtcgtcctagctggggtgatacaaatgctggtggccatgag
ggaagtagttgtggctgggttggtaataacagtggtgttggtaacggaggtggctggggc
ggtggaagttgtcagggtgggaacagcagcgatggaaatgatcagacacgtagttttgct
gatgggaacgatgataatgcagctggtgctagtggcggagggtggggtggcaacaacaat
ggtggcagtagcaaaggtggctggggtggtaactctgatggtggagctggtagtgggtgg
aattaa
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