Zingiber officinale (ginger): 121984005
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Entry
121984005 CDS
T08725
Name
(RefSeq) pseudouridylate synthase 7 homolog isoform X1
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
zof03016
]
121984005
Enzymes [BR:
zof01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
121984005
Transfer RNA biogenesis [BR:
zof03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
121984005
Prokaryotic type
121984005
BRITE hierarchy
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Ortholog
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GFIT
Motif
Pfam:
TruD
PUS7L_N
R3H_PUS7L
Motif
Other DBs
NCBI-GeneID:
121984005
NCBI-ProteinID:
XP_042392686
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Position
5B:6153068..6168475
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AA seq
680 aa
AA seq
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MAKSLDESDVGISCFVSSLPGFRGILKQRYSDFIVNEVDVDGNIVHLTSFDLPLEDTEGE
VEDNACSDDKDYTSVIESFRLLCGEADADALKEFIAKVLSLERDVPPVMLAPDPDKSHRA
EVHNFFKKNFKFLVTDTVEESGENSKYIRVRRCSGNGGGPSKRGMKRKDKDDKPFDSRGS
KSWPEHLGKFLRFNLYKENKDTQEALGLIGKMLGVNQRSFGFAGTKDKRSVSTQRVTIFK
QRAKRLAELNSRMFGIKVGDFCYVNEGLVLGQLTGNHFTITLRGISADSEDIIKEATDSL
WRNGFINYYGLQRFGSGSVPTHLVGAALLKGEWKTAANLILDPREGERPIVREAREYYKE
HGDVDLTLKKLPRHLVAERSILQCLKKFPGNYLQALKTIPRTLRMMYVHSYQSYLWNHAA
SMRVQKYGISQVVLGDLVLCKEVLPTVCDSSEHEDDFNDGDNSLLDLSDELPSEENVQFV
KAVDSEDLLKGHYTFEDVVLPLPGSRIRYPTNDIANVYHDLAKKDGITLTESVHGAKEFS
ISSMKGAYRQVFQRPIDFVWELVDYTNDNLPLAETDLNILEKAANMTQNEVHVDGICSSQ
IRTSDTENSIGMHLDEDSNENPLSTIETINSSDILSKKQALKMAFTLPTSCYATMAIREI
LKSSTSSWISRLCRFLIIKH
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggccaaatcgctcgacgagtccgatgtcggcatctcgtgcttcgtctcctcccttccc
ggcttccgcggcatcctgaaacagaggtactctgactttatagtaaacgaagtagatgtt
gatggcaatattgttcatctcacctcctttgatcttcccttagaggatacggagggcgaa
gttgaagacaatgcttgctcggatgacaaagattacacctcagtgatcgaatcgtttcga
ttgctatgcggtgaggcggatgctgatgcattgaaggaatttattgcaaaagttttgtcc
ttggaaagagatgtaccgcctgtcatgcttgctccagatcctgacaagtctcatcgagca
gaagttcacaatttcttcaagaaaaatttcaagtttttagtcacggatactgttgaagaa
tctggagagaattcaaagtacataagggtgaggcgctgttcaggcaatggaggaggtcca
agcaagagaggaatgaaaaggaaagataaagatgacaaaccatttgatagccgaggctct
aaaagttggcctgagcatcttggcaagtttctaaggtttaacctttataaagagaacaag
gatacacaggaggctctaggactgattggaaagatgctgggagtcaatcaacgatcattt
ggctttgctggtacaaaagataaacggtccgtgtctactcagagggttaccatcttcaag
cagcgggcaaaaaggttggctgaacttaacagcagaatgtttgggattaaagtaggagat
ttctgttacgtgaatgaagggcttgttcttggtcagcttactggaaaccatttcacaatt
actttgagagggatctctgcagattctgaagatatcatcaaagaagccacagatagctta
tggagaaatgggtttatcaactattatggtttacagcgttttggaagtggttcagtgcca
actcatcttgttggagcagcattacttaagggtgagtggaaaactgctgctaacttgatc
cttgatcctagggagggagaacgcccaattgtaagggaggcacgcgaatattataaagag
catggtgatgttgatttaactctaaagaaattacctcgccatctagttgctgagagatct
attcttcaatgtttgaagaaattccctggaaactatctgcaagcattaaagactatacct
agaacattgaggatgatgtatgtgcatagctaccaaagctatctatggaatcatgcagct
agcatgagggtgcaaaaatatggcatttcacaagttgttcttggtgaccttgtgctctgt
aaagaagttttgcctacagtttgtgacagttcagaacatgaagatgattttaacgatgga
gataattctttgttggatttgtctgatgaactaccttcagaagaaaatgttcagtttgta
aaagctgttgattccgaagatcttcttaaaggacactacacatttgaggatgttgtactt
ccattgcctggttcaagaattagatatccaacaaatgatattgctaatgtatatcatgat
ttggctaaaaaggatggaatcactttgacagaaagtgttcatggtgccaaggaattctca
atttctagtatgaagggagcttatagacaagtgttccagcgccctatagattttgtatgg
gaactggtggattacacaaatgataatttgcccctagcagagactgatttgaatatcttg
gagaaagctgctaacatgacacagaatgaagtacatgtagatggaatatgtagcagccaa
attagaacctctgatacagagaattcgattggcatgcacttggatgaggatagcaatgag
aatccattatcaacaattgagaccatcaacagttctgatattctatcaaagaagcaagct
ctgaagatggcatttacccttccaacttcatgttatgccacaatggccataagagagata
ctaaaatcttcaacctcgagttggatatcccgtctgtgcaggtttcttatcataaagcac
taa
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