KEGG   Zingiber officinale (ginger): 121984080
Entry
121984080         CDS       T08725                                 
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1a
  KO
K10695  E3 ubiquitin-protein ligase RNF1/2 [EC:2.3.2.27]
Organism
zof  Zingiber officinale (ginger)
Pathway
zof03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:zof00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    121984080
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:zof04121]
    121984080
   03036 Chromosome and associated proteins [BR:zof03036]
    121984080
Enzymes [BR:zof01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     121984080
Ubiquitin system [BR:zof04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    121984080
Chromosome and associated proteins [BR:zof03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Canonical PRC1 (PRC1.2/1.4)
     121984080
    Noncanonical PRC1 (PRC1.1)
     121984080
    Noncanonical PRC1 (PRC1.3/1.5)
     121984080
    Noncanonical PRC1 (PRC1.6)
     121984080
SSDB
Motif
Pfam: zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-RING_UBOX zf-RING_5 zf-C3HC4_3 zf-C3HC4_4 zf-RING_4 zf-RING_6 zf-rbx1 zf-Nse zf-C3HC4_5 zf-RING_10 ZNF512_C2HC zf-RING_11
Other DBs
NCBI-GeneID: 121984080
NCBI-ProteinID: XP_042392793
LinkDB
Position
5B:complement(8335251..8351692)
AA seq 474 aa
MPAPKRPLSPPPVHSIPASDDTPPSAMPLADPPPLLLKHEPDVEDREATAQELRDDFDGR
VGGGRSSDEGDEEEEEDDEAEKPEFIFVKLADIRKEVQCPICLGIIRKTRTVMECLHRFC
RECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIDKYEEEELAFHEEEK
SRNKKIQAYIAETFRRQSEALGRRRSSTRANTPFGRKPQGSYQGHLRGRGRNIGNDAAVI
GSDEEEETNANDESKDSSSADEPSPDRKPKRCKRWGAPPARTAGSVDMAEENEDFEINRE
PLGTLPLRAGNREMLAWGKNGTRSQTRHNTSGGSNGRLTKGGRVAKLVDYLRNLEEVDDE
FDIHLTLIPLDKESMPNLERQFLSCRPTMSIKHLYQFIALQTSTLLEGVEIYARKPRVET
MSMRCARPEGEPSTDPSSAGLLRLEGEESLTTLYASFTSDSRELVLVYRLKIES
NT seq 1425 nt   +upstreamnt  +downstreamnt
atgcccgccccaaagcgcccgctttcgcctcctcccgtccactccatccccgcctcggat
gatacccctccctccgcgatgcccctcgccgacccgcctccgcttctgctgaagcatgag
cctgatgtcgaggacagggaggccactgcacaggaactgcgggatgatttcgatggacgg
gttggtggcggaagatcgtcggacgagggtgacgaggaggaggaggaggacgacgaggcg
gaaaaaccggaatttatttttgtgaaacttgctgacattcggaaagaagtgcaatgccct
atctgcttaggaataatacgcaagacaaggacagtaatggaatgccttcatcggttttgt
agagaatgtattgacaaatcaatgaggcttggaaataatgaatgtcctgcatgccgcaca
cactgtgcaagtcggcgttctttgagggatgatcccaactatgatgcccttatagcagcg
ctatatcctgacattgacaagtatgaggaggaggagctggctttccatgaagaggagaaa
tcccgcaataagaagatacaagcatacatagctgaaacgtttcgacgacaatctgaagct
cttggtaggagaaggtcatccactagagctaacacaccatttggaagaaaaccacaagga
agttaccaaggccatctacgtggtcgaggcagaaatattggtaacgatgctgcagttatc
gggtctgatgaagaagaagaaaccaatgccaatgatgaatccaaagattcctcatctgcg
gatgaaccctccccagaccgaaagccaaagagatgcaagagatggggggcacctccagcc
agaacagcaggaagtgtagacatggctgaagagaatgaggattttgaaatcaacagagag
cctcttggtacattgcctttgcgagcaggaaacagagagatgctcgcatgggggaagaat
ggcactcggagtcaaactagacataatacttctggcggttcaaatggcaggttgacaaaa
gggggacgcgttgccaaattggttgattatcttcggaatctagaagaagttgatgacgag
tttgatatacacttgaccctgattcctttggataaggaaagcatgccaaatttggaacga
caatttcttagctgcaggccgaccatgtcaatcaaacacctgtaccaatttattgctctt
cagacatccacactacttgaaggagttgaaatatatgcaaggaaacctcgagtagaaaca
atgtcaatgaggtgtgcccgcccagagggtgagccatctactgatccttcttcggcaggc
ctactgagattggagggagaagaatcccttaccacactctatgcttctttcactagtgat
agtagggagctggttctggtttatcgtctgaagattgagagctag

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