Zingiber officinale (ginger): 121984270
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Entry
121984270 CDS
T08725
Name
(RefSeq) probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X1
KO
K05391
cyclic nucleotide gated channel, plant
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
121984270
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
zof04040
]
121984270
Ion channels [BR:
zof04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
121984270
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Motif
Pfam:
Ion_trans
cNMP_binding
DUF7074
Motif
Other DBs
NCBI-GeneID:
121984270
NCBI-ProteinID:
XP_042393060
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Position
1B:complement(146590650..146763667)
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AA seq
626 aa
AA seq
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MTDREDDLVSIVSGNIELPRFTARSVSMSIPPSFAIEDTFISHTGPLRIRKVPEISTVSG
PLSRNTRHGVTRVQSRSNAGTPEVFGIDDSSYGGDVMRHEHLLMSGPLGLCNNPDCTECP
AAYKTKKAFLRSSISLDKKLHDILYGDNHSWAEKWVSRLNSFFPIMNPHTRVVQQWNQFF
VISCLVAIFIDPLFFFLLSVKEEEKCIVFNWSLAIGIAVVRSVTDFIYLLHMILQFRLAY
VAPESRVIDIGDLVDQPKKIALNYLRGYFFLDLFVVLPLPQVMILAMIPDYVGPSAAYFA
KNLLRVTVLLQYIPRIIRFVPLLGEQSATGFIFESAWANFVNNLPIFVLVGHVVGSCWYL
FGLQRVNQCLQEACTSQFLNCKTLIDCGRGDVDEGQRQMWVNDSNSSSCFDIVDGTFRYG
IYQQVVLLSTQPNVVQRYIYALFWGFQVRIFSLMDEQMLDAIYKKLKQKVYIKGSDIFYK
GGPVEKMVFIVSGKLESIGADGNIAPLAEGDVCGEELLTWYLEHTSVTREGGRIQFPGSR
SLSTRTVTCLTNVEAFALHAADLEEVTTLFSQFLRNPRGQGAIKYELPYWRKMPVTRCQV
AWRYRQKHLKRASITNNLSANHTARR
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgactgatcgtgaggatgatcttgtctctatagtgtcgggaaacattgaattgccaaga
tttacggccaggagcgtatcgatgtctatcccaccctcctttgccattgaggataccttt
atatctcatactggtcctctgcgtatccggaaggttcctgagattagtactgtaagtggc
cctttgagtaggaatacgaggcatggagttaccagagtgcaaagtagatcaaatgctggt
acacctgaagtatttggcattgatgattcctcttatggtggtgatgtcatgagacatgaa
catttgctgatgtctgggcctttgggactgtgcaacaatcctgattgcactgagtgccct
gcagcttataaaaccaaaaaggcatttctaagaagttctatatctctggataaaaagctt
catgacattctatatggggataatcatagctgggctgaaaaatgggtttcgcggctgaat
tcatttttcccgattatgaatcctcatactagagttgttcaacagtggaaccagttcttt
gtaatatcttgcttggttgcaatcttcatcgacccactgttttttttcttgttatctgta
aaggaggaagaaaaatgcatagttttcaactggtctttggcaattggaattgctgttgta
cggagtgtgactgatttcatttacttgttacacatgattcttcagtttagacttgcatat
gttgctcctgaatctagagtgatcgatattggggatctagttgatcaacctaagaaaatt
gctcttaattatcttcgtggatactttttcttggacttgtttgttgtattgccacttcct
caggtaatgatattggcaatgataccagattatgtggggccatcagcagcatattttgcc
aaaaatcttttacgtgtaactgttctcctccaatatatccctcggataatcagatttgtt
ccattgcttggtgagcaatctgcaactggtttcatatttgagtccgcatgggcaaacttt
gtcaataatcttcctatttttgtattggttggacatgtggttggttcatgttggtacctc
tttggcttacagagagtaaatcagtgtctgcaggaggcctgtacttcacagtttctaaat
tgtaaaactttgatagattgtggtcgtggtgatgttgatgaaggacaaagacaaatgtgg
gttaatgattccaattctagttcttgctttgacattgttgatggaacctttagatatggg
atttaccaacaagttgttttgctaagcactcagcctaacgttgtacaaagatatatttat
gctctattttggggttttcaggttcgcattttctccctaatggacgaacaaatgttagat
gccatatacaagaagttaaagcaaaaggtgtacattaaaggaagtgacatcttttataag
ggagggccagttgaaaagatggttttcatagtctctggaaaattggaaagtattggagca
gatggaaacatagcccccttagcagagggtgatgtatgtggcgaggagctccttacgtgg
tatcttgagcacacttcagtaactagagagggtgggagaatccaattcccaggatcacgg
tcgttatcaactcgaactgttacatgtctaaccaatgttgaagcttttgcactccatgct
gccgatctagaagaagtcactacattgttctcccagttcttgagaaacccacgcggacaa
ggagctattaagtatgaattaccctattggagaaaaatgcctgtgacacgctgtcaagtg
gcttggagataccggcagaagcatttgaagcgcgctagcatcacaaacaatttgtctgct
aatcacacagctcgacgctga
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