Zingiber officinale (ginger): 121984668
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Entry
121984668 CDS
T08725
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
121984668
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121984668
03009 Ribosome biogenesis [BR:
zof03009
]
121984668
04131 Membrane trafficking [BR:
zof04131
]
121984668
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
zof04147
]
121984668
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
121984668
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
121984668
Membrane trafficking [BR:
zof04131
]
SNARE
SNARE associated proteins
Others
121984668
Autophagy
Aggrephagy
Other aggrephagy associated proteins
121984668
Exosome [BR:
zof04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
121984668
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
CDC48_2
AAA_16
AAA_5
AAA_2
AAA_33
AAA_22
AAA_14
NPHP3_N
TIP49
RNA_helicase
AAA_17
AAA_28
nSTAND3
Mg_chelatase
ATPase_2
AAA_18
nSTAND_NTPase5
Parvo_NS1
ABC_tran
Viral_helicase1
NB-ARC
AAA_7
NACHT
TsaE
DUF815
IstB_IS21
Vps4_C
Zeta_toxin
AAA_lid_PRS2_C
Zot
Motif
Other DBs
NCBI-GeneID:
121984668
NCBI-ProteinID:
XP_042393669
LinkDB
All DBs
Position
5B:complement(80603017..80610625)
Genome browser
AA seq
807 aa
AA seq
DB search
MANPGEASSSDPKGKKDYSTAILEKKKAPNRLIVDEATNDDNSVVSMHPDTMEKLQLFRG
DTILLKGKKRRDTICIALADDTCDEPKIRMNKVVRSNLRVRLGDVVSVHQCQDVKYGKRV
HILPIDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYC
IVAPDTEIFCEGEPVKREDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGV
KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEK
NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVMVIGATNRPNSIDP
ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALC
TEAALQCIREKMDIIDLEDESIDAEILNSMAVTNEHFKTALGSSNPSALRETVVEVPNVS
WDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC
QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGG
AADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRYQ
IFKACLRKSPVAKDVELRALAKYTQGFSGADITEICQRACKYAIRENIEKDIEREKRKSE
NPEAMEEDDEADDIAEIKAVHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGLGSEFRF
ADRSEATPGADPFATPTVDADDDDLYS
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacccgggcgaggcctcctcttccgatccaaaggggaagaaggattacagcacg
gcgatcctcgagaagaagaaggcgccgaaccgtttgattgtggatgaagctacaaatgac
gacaattcggttgtttcgatgcatcccgacacgatggagaagctgcagctgtttcgtggc
gataccatactcttgaaggggaagaaaagaagggatacaatctgtattgctctagctgat
gatacatgcgatgaaccaaagatcaggatgaacaaggttgtcagatcaaatctcagggtg
aggcttggtgacgttgtatctgttcatcaatgccaagatgtcaagtatggaaagcgtgtc
cacatacttcctattgatgacacaattgaaggagttacaggaaacttgtttgatgcatat
ttgaaaccttattttctagaagcctatcgtcctgttagaaaaggggatcttttcctcgtc
agagggggtatgaggagtgttgagtttaaggttatagaaactgatcctgctgaatactgt
attgtcgctcctgatactgagattttctgtgagggggagcctgtaaaaagagaagacgaa
gacaggcttgatgaggtaggttatgatgatgttggaggagttaggaaacaaatggctcaa
ataagagagctagtagagcttcctctaagacatcctcaattatttaaatctattggcgtc
aagccgccaaaaggtattttgttgtatggaccacctggttcaggtaagactttaatagca
agagcagttgcaaatgagacgggagcctttttcttttgcatcaatggcccagagatcatg
tcaaagctagctggtgagagtgagagtaatttgaggaaggctttcgaagaagcagagaaa
aatgcaccctcaattatctttattgatgagcttgattccattgctcccaagagagaaaaa
actcatggggaagttgaaaggcgtatagtttctcaactattaacactgatggatgggttg
aagtcacgtgctcatgtaatggtcattggagctaccaacaggccgaacagtattgatcca
gctcttagacgattcggtaggtttgacagagaaattgacattggtgtccctgatgaggtt
ggacgattggaggttcttcgcatccatactaagaacatgaagctatctgatgatgttgat
ttggaaaggattgctaaggacacacatggctatgttggggctgaccttgctgctttatgc
actgaagctgctctccagtgtatccgggaaaagatggacataattgatctagaagatgaa
tcaattgatgcagagattctcaactctatggctgttacaaatgaacattttaagactgct
ttgggatctagtaacccatctgctctccgtgaaactgtcgtcgaagtaccaaatgtcagc
tgggatgatattggtgggctggaaaatgtcaagagggagctgcaagagactgtccaatat
ccagttgagcatcctgagaagtttgagaagtttggaatgtctccttccaagggagttttg
ttttatggaccaccgggatgtggtaaaacattgctagctaaggccattgctaatgaatgc
caagctaatttcattagtgtgaagggtcctgaattgctgaccatgtggtttggtgaaagc
gaagcaaatgtgcgtgaaatatttgataaggctcgccaatctgcaccatgtgtgctcttt
tttgatgaacttgactccattgcgactcagagaggcagcagtgtcggtgatgcaggaggt
gctgctgatagggttcttaatcagctactgacagagatggatggcatgaatgccaagaaa
actgtattcattatcggggcaaccaacagaccagatatcatagatcctgctctgcttagg
cctggccggttggaccagttgatttatattcctttaccagatgaggcctctcggtaccaa
atttttaaagcttgcctaagaaaatctccagtggcaaaagatgttgagctgagggctctt
gcgaagtacactcagggatttagtggtgcggacatcacagaaatttgtcagcgggcatgc
aagtatgccattagagaaaacattgaaaaggacattgaaagagaaaagaggaagagtgaa
aatcctgaagccatggaggaagacgatgaggctgatgacatagcagagatcaaagccgtt
cattttgaagagtcaatgaagtttgcccgcaggagtgtcagcgacgctgacattcgcaag
taccaagcatttgctcaaactttgcagcagtcacggggtcttggcagtgagttccgtttt
gccgatcgttctgaagctacacctggagcagacccttttgcaaccccaactgtcgatgct
gatgatgatgatttatatagttag
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