Zingiber officinale (ginger): 121984781
Help
Entry
121984781 CDS
T08725
Name
(RefSeq) probable pectate lyase 8
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof00040
Pentose and glucuronate interconversions
zof01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
121984781
Enzymes [BR:
zof01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
121984781
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
121984781
NCBI-ProteinID:
XP_042393846
LinkDB
All DBs
Position
5B:complement(85669690..85675250)
Genome browser
AA seq
458 aa
AA seq
DB search
MAAGMATESLRWPRWLALGLLVLVGWFGVEQTASSRIGVAAGEAAVARRNLRQTVAANQS
SSSGILESVSRDVAVGAVDDPEFVAAQVHKLIDNSTARRELGYLSCGTGNPIDDCWRCDP
EWHFNRKRLADCGIGFGRNAIGGRDGRFYVVTDPGDDDPVNPRPGTLRYAVIQDEPLWIV
FKRDMVITLSQELIMNSFKTIDGRGTKVHIAYGACITIQFVTNIIVHGLHIHDCKPTGNA
MVRSSPSHYGWRTIADGDGVSIFGSSHIWVDHNSLSNCADGLIDAIMGSTAITISNNYFT
NHNEVMLLGHSDSYVRDKAMQVTIAFNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAI
GGSGDPTINSQGNRYLAPVNPFAKEVTKRVDTDSNVWKGWNWRSEGDLLLNGAYFTPSGA
GASGSYAKASSLGAKSSSMVGSITSGAGALRCLRRTHC
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgggatggcgacggaatcactgaggtggcctcgctggctggctctcggtctt
ttggtgctcgtcgggtggtttggagtcgaacagaccgcctcatcgaggatcggagtggca
gcgggggaggcggcagtggcgaggaggaatttgagacaaactgtagcagctaaccagtct
tccagttccggtatactggagagtgttagtcgagatgtggcagtgggcgcggtcgacgat
ccggagtttgtcgcagctcaggtgcacaagctgatcgacaacagcaccgcacgtcgggag
cttggctacttgtcatgcgggaccgggaatcccatcgacgactgttggcgttgcgacccg
gagtggcacttcaaccgtaagcgcctcgccgactgcggcatcggcttcggccgcaacgcc
atcggcggccgcgacgggcgcttctacgtggtgaccgaccccggggacgacgaccccgtc
aatccccgcccgggcaccctccgctacgccgtcatccaggacgagccgctctggatcgtc
ttcaagcgcgacatggtcatcactctctcccaggagctcatcatgaacagcttcaagacc
atagacggccgcggtaccaaggtccacatcgcctacggcgcctgcatcaccatccagttc
gtcaccaacatcatcgtccacggcctccacatccacgactgcaagcccaccggtaacgcc
atggtccgcagttccccctcccactacggttggcgcaccatcgctgacggcgacggcgtc
tccatcttcggctccagccacatctgggtcgaccacaactccctctccaactgcgctgac
ggcctcatcgatgccatcatgggatccaccgccattaccatctccaacaactacttcacc
aaccataacgaggtgatgctgttaggtcacagcgattcttacgtgagggacaaagccatg
caagtaaccattgccttcaaccatttcggagaaggtctcatacaaagaatgcctagatgt
cggcatggctacttccacgtagtgaacaatgactacactcactgggagatgtacgccatc
ggtggcagtggcgatcccaccatcaacagccaaggcaacagataccttgccccggtgaac
ccattcgcaaaggaggtgactaagcgggtggataccgattcaaatgtgtggaagggttgg
aactggagatcagaaggcgatctcctattgaacggcgcctacttcaccccctctggcgcc
ggagcctcgggcagttatgccaaggcctccagcctgggggccaagtcttcctccatggtt
ggctccatcacctccggcgccggtgccctgcgctgcctccggcgcacccactgctga
DBGET
integrated database retrieval system
