Zingiber officinale (ginger): 121984827
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Entry
121984827 CDS
T08725
Name
(RefSeq) sm-like protein LSM8 isoform X1
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121984827
09123 Folding, sorting and degradation
03018 RNA degradation
121984827
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121984827
03041 Spliceosome [BR:
zof03041
]
121984827
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121984827
mRNA degradation factors
5'-3' decay
Lsm complex
121984827
Spliceosome [BR:
zof03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
121984827
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
121984827
NCBI-ProteinID:
XP_042393902
LinkDB
All DBs
Position
5B:complement(86750697..86755176)
Genome browser
AA seq
131 aa
AA seq
DB search
MSTGPGLESLVNQTISIITNDGRIIVGTLRGFDQATNIILDESHERVYSTRVSYSLYSTV
IFFFFLPISTFNPLCLFLLSIILQEGVQQLALGLYIIRGDNISVVGELDEELDLVNDLSK
IKAHPLTPVIH
NT seq
396 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaccggtcctggcctagagtcattggtaaaccaaactatctcaatcatcacaaat
gatgggcgcatcattgttggaactttgagaggctttgaccaggcaacaaatatcatcctt
gatgaatcacatgagagagtttactccactagggtaagttactcattatattctactgtt
attttttttttttttttgcccatctcaacgtttaatcccctctgtttgttcttattgtcc
attattttgcaggaaggggtacaacaactcgccctcgggttgtatattataagaggggat
aacataagcgttgttggagagttggacgaagagctggatctagtgaatgacttgtccaaa
attaaggcacatccccttacgcctgtaatacattaa
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