KEGG   Zingiber officinale (ginger): 121984827
Entry
121984827         CDS       T08725                                 
Name
(RefSeq) sm-like protein LSM8 isoform X1
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
zof  Zingiber officinale (ginger)
Pathway
zof03018  RNA degradation
zof03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:zof00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    121984827
  09123 Folding, sorting and degradation
   03018 RNA degradation
    121984827
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zof03019]
    121984827
   03041 Spliceosome [BR:zof03041]
    121984827
Messenger RNA biogenesis [BR:zof03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     121984827
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     121984827
Spliceosome [BR:zof03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    121984827
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 121984827
NCBI-ProteinID: XP_042393902
LinkDB
Position
5B:complement(86750697..86755176)
AA seq 131 aa
MSTGPGLESLVNQTISIITNDGRIIVGTLRGFDQATNIILDESHERVYSTRVSYSLYSTV
IFFFFLPISTFNPLCLFLLSIILQEGVQQLALGLYIIRGDNISVVGELDEELDLVNDLSK
IKAHPLTPVIH
NT seq 396 nt   +upstreamnt  +downstreamnt
atgtcaaccggtcctggcctagagtcattggtaaaccaaactatctcaatcatcacaaat
gatgggcgcatcattgttggaactttgagaggctttgaccaggcaacaaatatcatcctt
gatgaatcacatgagagagtttactccactagggtaagttactcattatattctactgtt
attttttttttttttttgcccatctcaacgtttaatcccctctgtttgttcttattgtcc
attattttgcaggaaggggtacaacaactcgccctcgggttgtatattataagaggggat
aacataagcgttgttggagagttggacgaagagctggatctagtgaatgacttgtccaaa
attaaggcacatccccttacgcctgtaatacattaa

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