Zingiber officinale (ginger): 121984847
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Entry
121984847 CDS
T08725
Name
(RefSeq) sister chromatid cohesion protein SCC2-like
KO
K06672
cohesin loading factor subunit SCC2
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
zof03036
]
121984847
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
121984847
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
PDS5
PHD
Cnd1
INTS1_R4
PHD_2
Motif
Other DBs
NCBI-GeneID:
121984847
NCBI-ProteinID:
XP_042393931
LinkDB
All DBs
Position
5B:complement(87518184..87543069)
Genome browser
AA seq
1750 aa
AA seq
DB search
MELNQDLRFERYCRLVNTTHSEIAPSLSLPSLPPCFGSVDQKIGLSDALAGSRAGDVPEI
IAHARTISELLSNCDVGYLNLKEDGAVGTDDPEDHSILYQEVMKFNHDAFKCFRPGPSQE
WRSSNQTLEKKSIEQKVVKLKRVIETDSDDRSEKNLVNEPPSVTSRKPKMIRKETDSVPL
TAGPDTLDQQGIVGSFCEMVEDFCSKAEFPDDLELADEQSLPLSEIKTLVNQIMSIRSKK
VLHLVPLDILVRLLGVLDRQIQCAQGVSSDGNDNDNPDVDAANLVLCALESSHAALAIMA
HQDMPKQLYREEVIERILDFSRHQIMEIIAACNPLQNLAKPSDNDFFDGEDADDDDINNN
SSAKKRRYSRSFNMRKSAGSKISTPVQSVLQKLCTILGFLKDLLSVERLSDSCILQLVKT
SFSTFLAENVQLLQLKCINLISGVYASYTIHRSFLIDETLQLLRKLQFSKRAIRTYLLPD
EEQKQIQMITALLIQMVQFSGNLPESLKSASNWNVLLDTSSDSSTPAKCYEDATKTCCLF
WTSFLQRLTNGKSQDASESKIILENLVMDLLTTLNLPEYPASASLLEVLCVLLLENAGLK
CKDISARCMAVDFLGAIAAKLKRDAVTSSRDKFWILQQLVDRNESVLNGKNDACSVCLKG
RGANIICHICKRCFHSDCLGIAGQEMLLRDWACHICLCKKQLIALHSYCKMQNKDNAKQN
IGLTSTTSGDTDSVTGSEVIQQILLNYMQQNGSEDDVNLFTRWFHLCLWYKDDSQSRENV
TYHLARLKSRAILRDSTGSLFLSRDGAKRICLALGQNVSFARGFDKILYLLLVSLRENSP
VLRAKALRAVSAIVEADPKVLCYERVQTAVEGRFCDSAISVREAALELVGRHIASHPEVG
LKYYEKVAERIKDTGVSVRKRAIKIIRDLCISQSNFPEATQAFIVILSRVTDEESSVQDI
VCKTFYELWFEEPTGSQKHLIADGSCVPLDIAKKTEQIVDMLRNMPNNHHLVTIIRRNLT
LDFLPQSAKATGINASLASVRKRCELICKRLLERILQVEEENSDKEEGGALPYVLALHSF
CVVNPALCVPSTDQSQFVTTLQPYLKNQVENKAASQLLESILFIVNAVLPLLRKPPQSVI
EELEQDLKHMIVRHSFLTVVHACIKCLCSLSKIAGKGANVVEYLILVFFKRLQDSSSDNT
QALVRSLFCLGLLLRYSSDLEFRMDSQHIHIHKSLLSLKKYLVMEDIVLKVRALQALGNV
LIARPEYMLENDVGKILRATLDTTVDPRLKTQALQNLYEYLLDAETKFSSDTENNNAIPH
FEGSRNAVPVAAGAGDTNICGGIIQLYWNNILEICLDVDEQIRQTALKILEVVLRQGLVH
PITCVPCLIALEIDPLEVNSKLAHHLLMNMNEKYPSFFESRLGDGLQMSFKFVQCIANTH
NLISGEKGKLDRNPIAFVRPGISRIYRLIRANRISRNKFIHSIVKKFETGGGNYLPISFL
VYCTEILASLPFTCPDEPLYLIYDINRIIQVRAGALEANMKAWSSFLQHQNSVKSATTNE
NLDLNANSCWQKTPQHSLEMEDKMSNSHAISEEDIHKIQADCHEAIALQLLLKLKRHLKI
TYGLNDARCQAFSLKEPPKPGETISRQNVPFSAGDTQLSLPTSYQAMIQKYQDFKVALRE
DTIDYSIYSASIKKKRPTPRSSKGGKTANQRRTNQDDDEDDDEDWTGGPRMLDFSNQSNG
VRITRQRVQV
NT seq
5253 nt
NT seq
+upstream
nt +downstream
nt
atggagctcaaccaggacctacggttcgagcgctactgccgcctggtcaacactacccac
tccgagatcgctccctcattatccctgccctcgcttcccccgtgcttcgggtctgtagac
cagaagatcggcctctccgacgcgctcgctgggtcccgagccggcgacgtcccggagatt
attgcgcacgctagaacgatctccgagctacttagtaactgcgacgtgggatacttaaat
ctcaaggaagatggagccgttggtactgatgacccggaggaccattcgattctttatcaa
gaggttatgaagtttaatcacgatgcatttaagtgttttcgtccaggtccttctcaggag
tggagaagttctaatcaaacacttgaaaagaagtcgattgaacagaaagttgtgaaattg
aaaagagttattgaaactgatagtgatgatcggtcagaaaaaaacttggtcaatgagcca
ccttctgttacctcaaggaaacctaaaatgattaggaaagaaactgattctgttccatta
acagcaggcccagatactctggaccaacaaggtattgttggaagcttctgtgagatggta
gaagatttctgtagcaaggcagaatttcctgatgatttagaattagcagatgagcagtct
ctgcctctttctgagatcaaaacacttgtgaaccaaatcatgtctattcgttcaaagaaa
gtcctgcacttggttccacttgacattcttgtgagacttttaggtgttttagatcgccaa
atacaatgtgcacaaggcgtgtccagtgatggaaatgacaatgacaatcctgatgttgat
gctgcaaatcttgtcctatgtgctctcgagtcttcacatgcagcactggcaattatggcc
caccaagatatgccaaagcagttatatagagaagaagtgattgaaagaattcttgatttc
tcaagacatcaaatcatggaaatcatagctgcatgcaatcctctgcagaatcttgccaaa
ccaagtgataatgatttctttgatggtgaggatgctgatgatgatgatataaataataat
tcatcagccaaaaaaaggcgatatagtaggagttttaatatgagaaagtctgcagggagc
aaaatttctactccagtgcagtctgtccttcaaaaactttgcaccattctaggatttctc
aaagatctattgtctgtggagcggctatcagatagttgtattctacagctggtcaagact
agtttttctacctttttggcagagaacgtccaacttttgcaactaaagtgtattaatttg
atttctggggtgtatgcgtcatacacaatacaccggagttttttgatagatgaaacactg
cagcttcttcgaaaattacaattctctaagcgggccattagaacatatcttctaccagat
gaagagcaaaagcagattcagatgataacagctttgttgattcaaatggtacaatttagt
ggcaaccttccagagagtttgaagtcagcatcaaactggaatgttcttctcgatacttca
tctgattcaagtaccccagctaaatgttatgaagatgcaaccaaaacctgttgtcttttc
tggaccagttttcttcagagactaactaatggaaaatctcaggatgcctcagaatcaaag
ataatcttagagaacctagtcatggatctacttacaacattgaacttacctgagtatcct
gcttctgcttcattattggaggttttgtgtgtcttgctgcttgagaatgctggtttgaaa
tgcaaagacatttcagcacgttgcatggctgttgactttctgggagctattgcagcaaag
ctgaaacgcgatgctgtgactagcagcagggataaattctggattctacaacagctagtt
gatcgaaatgaatccgtcttgaatggcaagaatgatgcatgctctgtttgcttaaaaggg
aggggtgcaaacatcatctgtcatatttgtaagagatgttttcattctgattgcttggga
attgctggacaagagatgctgcttcgagattgggcttgtcacatttgtctttgcaagaaa
cagctcattgctttgcattcatattgcaagatgcagaacaaggataatgctaaacaaaac
attggtttgacaagcactacttctggagatacagattcagtcactggatcggaagtcatc
caacaaattcttttgaattatatgcaacaaaatggctcagaagatgatgtgaatctgttt
actcgctggttccatctgtgcttgtggtacaaggatgattctcaatctcgagaaaatgtt
acttaccatctcgctagactaaagtctagagccattttgcgtgactctactggttcttta
tttttgtcgagagatggggctaaaagaatatgcttagcgcttgggcaaaatgtttctttc
gctcggggattcgacaaaattctctatttgcttctggtaagcttgagggagaactctcca
gttttacgagccaaggcattgagagcagtcagtgctatcgttgaagctgatcctaaggtt
ttgtgttatgaacgtgtccaaactgctgttgaaggacggttttgtgattctgcaatttct
gttcgggaagctgctcttgaattggttggcagacatattgcttctcatcctgaagttggt
ttgaagtactatgaaaaagttgcagaacggataaaagacactggagttagtgtgcggaag
cgtgctattaagatcatccgtgatttgtgtatctctcagtctaactttcctgaagcgaca
caagcttttattgtgatactttctcgtgttactgatgaggaatcaagtgtacaggacata
gtttgcaaaacattctatgaactttggtttgaggagccaacaggaagtcagaagcacttg
atagctgacggtagctgtgtaccattggatatagctaagaagactgagcaaattgttgat
atgctgagaaatatgcctaataatcatcatcttgttacaattataaggcgtaatctgacc
cttgattttctcccacaatcggctaaagctactggaattaatgcttctttagcatctgtc
cgtaaacgatgtgagctcatttgtaaacgtctgttagaaagaatcttgcaggtagaagag
gagaatagtgataaagaggagggcggtgcactaccatatgtgcttgctttgcactcgttt
tgtgttgtaaacccagcactttgtgtgccatctacagatcaatctcaatttgttacaaca
cttcaaccgtatcttaagaatcaggttgagaataaagcagcctcacagcttcttgagagt
atactattcatagtcaatgctgtccttcccttgcttcggaagccaccacagagcgttatt
gaggaacttgagcaggacctgaaacacatgattgttcgccactctttcctgacagttgtt
catgcttgtatcaagtgcctttgttcgcttagcaaaattgcaggcaaaggtgcaaatgtg
gttgaatatttgattctcgtcttcttcaagcgtttgcaagattccagttcagataacaca
caggcattggttcgatcacttttctgccttgggttgcttctaaggtacagcagtgatcta
gaatttagaatggattctcaacatattcatattcacaagagtctcttgtcgcttaaaaaa
tatcttgttatggaggacattgtattaaaggttcgagctttacaggcactgggaaatgta
ttgattgctaggcctgagtacatgttggaaaatgatgttgggaaaatattgagggcaaca
ttggacactactgttgatcccaggctgaagacacaagcactgcaaaacctatatgaatat
cttcttgatgcggaaaccaaattcagttcagatactgagaacaacaatgcaattccacat
tttgaaggttctagaaatgcagtgcctgtagctgcaggtgcaggtgatactaatatttgc
ggaggaatcattcaactttactggaacaacattcttgaaatttgcttggatgttgatgag
caaattcgtcagacagctctcaagattctggaagttgttctacgtcaaggtctggtgcat
cctattacatgtgttccatgccttatagcacttgaaattgatcccctagaagtaaattca
aaattggctcatcacttgcttatgaacatgaatgaaaagtacccttctttctttgaaagt
cgtttgggtgatggccttcagatgtcatttaaatttgttcaatgcatagcaaatactcat
aatttaatctcaggagaaaaaggcaagttggataggaacccaatagcatttgtcaggcca
ggtatatctcgaatatacaggcttattcgagcaaatcgtatatcaaggaacaagtttatt
cactcaatagtgaaaaaatttgagactggcggtgggaattatttaccaattagctttctt
gtgtattgtacagagattcttgcatctctcccattcacatgtcctgatgagcccctttac
ttgatatatgatataaatagaataatacaagttagggcaggtgcattggaagcaaacatg
aaagcctggagttctttcttgcagcaccagaactcggtcaagagtgcaacaactaatgaa
aatcttgatctgaatgctaattcttgttggcaaaagacacctcagcacagtttggagatg
gaggacaagatgtcaaactcacatgcaatttcagaagaggacattcataagattcaggcg
gattgtcacgaggcaattgctctacaactccttttgaagttgaaaagacacttgaaaatt
acctatggactgaatgatgctcgatgccaggcattttctttaaaggaacctccaaagcct
ggagagacaatttctaggcaaaatgttcctttcagtgctggtgacactcaacttagtctg
ccaacctcctatcaagctatgattcaaaagtatcaggacttcaaggtggctttgagagaa
gacaccatagactattccatatactctgctagtatcaagaagaagcggcccactccaaga
agctcaaaaggtggaaaaactgctaaccagagaagaaccaaccaagatgacgatgaagat
gatgatgaagactggacaggcggaccacgcatgcttgatttcagtaaccagagtaacggc
gttaggataaccagacaacgagtgcaggtgtag
DBGET
integrated database retrieval system
