KEGG   Zingiber officinale (ginger): 121984866
Entry
121984866         CDS       T08725                                 
Name
(RefSeq) WD-40 repeat-containing protein MSI1-like
  KO
K10752  histone-binding protein RBBP4
Organism
zof  Zingiber officinale (ginger)
Pathway
zof03082  ATP-dependent chromatin remodeling
zof03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:zof00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    121984866
   03083 Polycomb repressive complex
    121984866
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:zof03036]
    121984866
Chromosome and associated proteins [BR:zof03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     121984866
  Histone modification proteins
   HAT complexes
    HATB complex
     121984866
   HDAC complexes
    Sin3A-HDAC complex
     121984866
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     121984866
    PRC2.2
     121984866
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     121984866
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    121984866
  Chromatin remodeling factors
   NuRD complex
    121984866
   NuRF complex
    121984866
   NuRF complex (fruit fly)
    121984866
SSDB
Motif
Pfam: CAF1C_H4-bd WD40 WD40_CDC20-Fz WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_EML_2 Beta-prop_TEP1_2nd WDR55 WD40_WDHD1_1st Beta-prop_EML EIF3I WD40_RFWD3 Beta-prop_WDR75_1st WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 WD_LRWD1 Beta-prop_RIG_1st eIF2A MIOS_WD40 Beta-prop_HPS5 Beta-prop_WDR19_1st NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_NUP159_NUP214 Beta-prop_IFT80_2nd
Other DBs
NCBI-GeneID: 121984866
NCBI-ProteinID: XP_042393953
LinkDB
Position
5B:complement(88232473..88237147)
AA seq 422 aa
MAKDEEEFRGELEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVQWFPDRDEPAGKD
YSVQKMILGTHTSDNEPNYLMLAQVQLPLEDAEYDARQYDDEHGEIGGFGSAGGKVQIVQ
QINHDGEVNRARYMPQNTFIIATKTVSAEVYVFDYSKHPSKPPLDGTCNPDLRLRGHNSE
GYGLSWSQFKQGHLLSGSDDAQICLWDINAAPKNKTLDALQIFKVHDGVVEDVAWHLRHE
YYFGSVGDDHYLLLWDLRTTNNKPVKSVVAHQGEVNCLAFNPFNEWIVATGSTDKTVKLF
DLRKLETALHTLDCHKEEVFQVGWSPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAAD
GPPELLFIHGGHTSKISDFSWNSCEDWIVASVAEDNILQIWQMAENIYHDEDLLGEETPK
SS
NT seq 1269 nt   +upstreamnt  +downstreamnt
atggcgaaggacgaggaggagtttcggggtgaactggaggagcgtttgatcaacgaggag
tacaagatatggaagaagaacacgcccttcctgtacgacctagtgatcactcacgccctc
gagtggccctccctcacagtgcagtggttccccgaccgcgacgagcccgccgggaaggac
tactccgtgcagaagatgatcctcggcactcacacctccgacaacgagcccaactacctc
atgcttgcgcaggtccagctcccgctcgaggacgccgagtacgatgcacgccagtacgat
gacgagcacggcgagattggaggctttggcagcgccggaggaaaggtgcaaattgttcag
caaataaatcatgatggcgaggttaatcgagctcgctatatgcctcagaataccttcata
atcgcaacgaagactgttagtgctgaagtttatgtttttgactacagcaaacatccatcg
aagcctccacttgacggtacatgcaatcctgatttgaggttgaggggtcacaattctgaa
ggatatggtttatcctggagccagtttaagcaagggcacctattgagtggttctgatgat
gctcaaatttgtctgtgggacattaatgctgctcctaaaaataaaacacttgatgctctt
cagatttttaaggtgcacgatggtgtcgttgaggatgttgcatggcatttaaggcacgag
tattattttggttctgttggggatgatcattatcttctactttgggatcttcgaacaaca
aataataagccagtcaaatctgttgttgctcatcaaggtgaggtaaactgcttagcattc
aatcctttcaatgagtggattgtcgcaactggatctactgataaaactgtcaagttattt
gatcttcgtaagcttgaaactgctctgcacacactagactgccacaaagaggaggttttc
caagttggctggagcccaaagaatgagactattctagcatcttgctgtcttggtaggcgg
ctcatggtgtgggatctaagcaggattgacgaggaacagacgccagaggatgctgccgat
ggccccccagagttgctgttcattcatggtggccacacaagcaagatctctgatttctca
tggaactcctgcgaagattggatcgttgccagcgttgcagaagataacatcctccaaata
tggcagatggcagagaacatttaccacgacgaagatttgctaggggaagagactccaaaa
tcttcttaa

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