Zingiber officinale (ginger): 121984876
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Entry
121984876 CDS
T08725
Name
(RefSeq) general negative regulator of transcription subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121984876
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121984876
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121984876
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121984876
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
121984876
NCBI-ProteinID:
XP_042393968
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Position
5B:88688993..88704620
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AA seq
875 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTENVNQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALMDARKLIEREMERFKVCEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVGDLETQIDHFEAEMEGLSVKKGKTRPPRLTHLETSITRHKA
HVMKSELILRLLDNDELSPDQVNDVKDFLEDYVERNQEDFDEFSDVDELYVSLPLDKVEA
LEDLVSLGPSSLTKIALSSAESQHTFQDQGEDAVPQESNSDATSKTLPSTMSLAPTLLPA
NSSGVSVVPTSAVSASIPVHPSTSAPTASVLLSGPPSAKSVTESSVAVSSSLPSANSVRE
EDTTFPGRRPSPAIPEIVGKGISRGISNPASISTNMAFSSASAISENVTVGSVPALSDIS
KPNSLNVDERIGSELAQPLVSPINNRILLQSLPKTNDGTSSNDSNNVGETPISGGRVFSP
SLVPGVQWRAQGAAFQNANESGQFRGRPEIAPDQREKFLQRLQQVQQGHSNLLNVSHISG
ANHKQFTTQQQSSLLQQFSPQNAPVAPHITLGLGVHGAGFGSVSPQQQPTILQQSSQHPA
VSSGMKDGDAAHANANAEDQQQQWHNMSEDLITDPISSPSLNKIIGDDDLKTSYTGTGPA
SAAESSQLSRENEMSLGQPLQAGQSSASLGVIGRRSALDLGAIGDNINGLAGNSGGMHDQ
IYNLQMLEAAYYKLPQSRDSERAKTYVPRHPAITPASYPQTQAPIIDNPAFWERSGLDPM
GTDALFFAFYYQQNTPQQYLAARELKRQFWRFHKKFNTWFQRHEEPKVTNDNFERGNYVY
FDFHIANDGSQHGWCQRIKTDFTFEYDFLEDELVV
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgggcgcgagcaggaagctgcagggcgagatcgatcgagtactgaagaaggtacaggaa
ggcgtcgacgtcttcgatagcatttggaacaaggtttatgatacggagaatgtgaaccag
aaggagaagttcgaggcggacttgaagaaggaaatcaagaagctgcagcggtatcgtgat
cagatcaagacatggattcagtcgagcgagataaaggataaaaaggttagtgcctcttat
gagcaggctctcatggatgctcgcaagctcattgaacgtgaaatggaaagattcaaggtt
tgcgaaaaagagacaaagacaaaagcattttccaaggaaggtttaggccagcaaccgaag
acagatccaaaagagaaggccaaatcagaaacgagggactggctcaacaatgtggttgga
gatttggagactcaaattgaccactttgaagctgaaatggaagggctctctgtcaagaaa
gggaaaacaaggccacctcgcctgacacatctggagacatccatcaccaggcacaaagct
catgttatgaagtcggagttgattttgagactgttggacaatgatgagttgagtcctgat
caggttaatgatgtcaaagactttcttgaagattatgttgaacgtaatcaggaggatttt
gatgaatttagtgacgttgatgaactttacgtctctctaccacttgataaggtagaagca
ctggaagatcttgtttcgcttggtccttccagtcttactaagatcgctttgtcatcggca
gagtcacaacacacatttcaggatcaaggtgaagatgcagttcctcaggaaagtaattct
gatgccacatcaaaaactctaccttcaaccatgtctttggcaccaacactccttccagct
aatagttctggggtatctgtggtccctacttcagctgtgagtgctagcattcctgtacat
ccatccacttctgcaccaacagcttcagttttactttctggtccaccaagtgcaaaaagt
gttacagagagctctgttgctgtctcttcgtcccttccctcagccaactcagtgagggag
gaagatacaaccttccctgggcgaaggccttcaccagccatcccagaaattgtagggaaa
ggtattagcagagggatatctaaccctgcatcaatcagtactaacatggctttcagttca
gccagtgcaatatctgaaaatgttactgttggttctgttccagcattatctgatatatct
aagcctaactctttaaatgtcgacgagagaattggaagtgaacttgcacagccattggtt
tctcctataaataacagaatcctattgcaatcattgcccaaaacaaatgatggaactagt
tcaaatgattctaataatgtgggagagactcctatttcaggaggaagagtcttttcacct
tctttagtccctggagttcaatggagagctcaaggtgcagcttttcagaatgcaaatgaa
agtggtcaatttcgggggcgacctgagattgctcctgatcagagggagaaatttttacaa
aggctccaacaagtgcaacaaggtcacagtaaccttctcaatgtgtcacatatctctggt
gccaaccacaaacagtttactacacaacagcagagctcccttttgcaacagtttagtcct
caaaatgctcctgttgcacctcatattaccctaggacttggagttcacggagcaggtttt
ggttcagtttcaccacaacagcaaccaactattcttcagcagtcctctcaacaccctgca
gtatcaagtggaatgaaagatggagatgctgcacatgcaaatgcaaatgcagaagaccag
caacaacagtggcataatatgtcggaagacctgatcacagatcctatctcaagtcccagt
ctcaacaagatcataggtgatgatgatctgaagacatcatacacaggtacaggtcctgcc
tctgcggctgaaagtagccaattgtctagagagaatgaaatgtcacttggccaaccatta
caagctggtcaatcctcagccagccttggtgttattggtagaagaagtgcactagatctt
ggtgctattggtgacaacattaatggcttagctggaaattctggtggaatgcatgatcaa
atatataacttgcagatgcttgaagctgcatattataaactcccacagtctagggactca
gaacgtgcaaaaacctatgttcctaggcatcctgcaattacacctgccagttatcctcag
actcaagcacccataatcgataatcctgccttttgggaacgatcgggtcttgatccaatg
ggcaccgatgccttgttttttgcattttactatcaacagaacactcctcagcagtactta
gctgctcgagaattgaagaggcagttctggagatttcacaagaaatttaatacatggttt
cagcggcatgaggagccaaaagtaactaatgataactttgaaagaggaaactatgtctac
tttgattttcatatcgccaatgatggctcacagcatggatggtgccagcggattaaaact
gatttcacctttgaatacgatttccttgaggatgaactcgtcgtatga
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