Zingiber officinale (ginger): 121985216
Help
Entry
121985216 CDS
T08725
Name
(RefSeq) pre-mRNA-processing factor 39-like isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
121985216
Spliceosome [BR:
zof03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
121985216
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
Cir_Bir_Yir
Motif
Other DBs
NCBI-GeneID:
121985216
NCBI-ProteinID:
XP_042394457
LinkDB
All DBs
Position
5B:complement(101896372..101909367)
Genome browser
AA seq
808 aa
AA seq
DB search
MENSQPLLYQASTTTDTSTNVSSEHILTNLDTALGVENSDPVSAMPLTNISITDGGGSYE
NNPSLTPENVPVDSVADVHTESTTNKENKADASTHAVGYDSVNGNINEMVNYQAVGAIEN
GVMSGDTGGAAIEHVYGDVVYSAEEERLWNLVQVNCLDFNAWTSLIDETEKVAENDIIKI
RKVYDAFLAEFPLCYGYWKKYADHEGRLDSINKVVEVYERAVLAVTYSVEIWLHYCTFAI
STYEDPDIIRRLFERGLAYVGTDYLSYQLWDEYIRYEESHQAWSNLAMIYTRILENPIQQ
LDRYFNCFKELASIHPLSEIRMAEEAAIVISTLDSSLESLHGEVHDDVVEQSSKPVSAGL
TEAEELEKYIAIREEMYKKAKEFDSKIIGFETAIRRPYFHVRPLDDIELENWHHYLDFIE
RGDDFNKVVKLYERCLIACANYPELWIRYVLCMEASGSMELAYNALARATQVFVKKQPEI
HLFAARFKELSADIDGARTTYQFLYSEVSPGLLEPIVKHANMEYRLGEKEAAFSIYERAI
NAEQEKEHSQLLPLLLIQYSRFLYLVVGDAEKAREVLSGHLENMQLSRLVLEAVIHLESI
QSLPKRVDYLDSMVEKFIMPNPGNANLASAIDREEISCIFLEFLDLFGDAQSIKKASNRH
AILFLRQKGMVVSKKRHAEDFLASDNAKMAKNFHEPGQSALGAYTNVQSQWPAGYGQTAP
AWPTATQPQTQWNPGYSSHAGYAAYGSYANSGQPQVATSAPQSAAYGAYPPTYQAHPQLG
YAQPSSAAVAPGFPPQPVAAPQPYYGSY
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatagtcaacccttactgtatcaagcatctactaccacagatacttcaaccaat
gtttcatctgaacacattttaacaaacttggacactgcgcttggtgttgaaaactctgat
cctgtttctgcaatgccattgaccaatatttctattactgatggtggtggctcctatgaa
aacaatccaagtttgacgccagaaaatgttccagttgattctgtagctgatgtgcatact
gaaagcactaccaacaaagaaaataaggcagatgcctcaacacatgcagttggttatgat
tcagttaatggaaacatcaatgaaatggtaaattatcaagctgttggagccattgagaat
ggggttatgtcaggtgatactggcggagctgccattgagcacgtgtatggagatgtggtg
tattcagctgaggaggaaaggttatggaatttggttcaggtgaattgtttagatttcaat
gcgtggacatcacttattgatgaaacagaaaaagttgctgagaatgacattatcaaaatt
cgaaaagtttatgatgcattcttggctgaatttcccttatgttatggctactggaagaaa
tatgctgatcatgaggggcgtttggacagtatcaacaaagtggtggaggtgtatgaacga
gctgttctagcagtaacctactctgttgaaatttggctgcattactgtacttttgcaatt
tcaacatatgaagatcctgatattatccgaaggttgtttgaacgtggactggcatatgtt
ggcactgattatctgtcataccagttgtgggatgagtacattagatatgaggagtctcat
caggcatggagtaatctggccatgatttataccagaattttggagaatccaattcaacaa
ctagatcgctattttaactgctttaaagagctggcatccattcatcctctgtccgaaata
cgtatggctgaggaagctgctattgtgatttccactttggattctagcttggaatctctt
catggcgaagttcatgacgatgtagtagaacaatcttctaaacccgtaagtgcaggttta
acagaagctgaggagttggagaagtatattgctattagggaagagatgtataagaaagct
aaagagttcgattctaagatcattggttttgaaacagctatcagaaggccatacttccat
gtcaggcctcttgatgatatagagcttgaaaattggcaccattatcttgattttatcgag
agaggagatgatttcaacaaggttgttaagttgtacgaaagatgtttaattgcttgtgcc
aattatccggagctttggatccgctatgttctatgcatggaagcaagtggaagcatggaa
cttgcctataatgctcttgctagggcaactcaagtctttgttaagaaacaacctgagatt
catctattcgctgctagattcaaggaactaagtgctgatattgacggagctcgcacaaca
tatcagtttctttactctgaagtttctcctggtttgttggaacctattgtgaaacatgca
aatatggaatatcgattgggtgagaaagaggcagctttctctatttatgagagagctata
aatgctgaacaggagaaagagcattctcagctgctaccattgttgcttattcaatactca
cgctttctttatttggttgttggtgatgcagagaaggcaagggaggttctatctggacat
cttgaaaatatgcaactatcacgattagttcttgaggctgtcatccacctagagtcaata
cagtcattgccaaagcgtgttgattacttggattcaatggtggagaaatttattatgcca
aatcctggtaatgctaatctcgctagtgccattgaccgagaagagatatcatgcatcttt
ttagagtttttggatctctttggagatgcacagtcaattaaaaaagcctccaaccggcat
gctattctttttttacgtcaaaagggcatggtggtatcaaaaaaaaggcatgctgaagat
ttccttgcctcggacaatgctaagatggcaaagaactttcatgaaccaggtcagtcagca
ttgggggcctatacaaatgttcaaagtcagtggccagctggctatggacaaacagctcct
gcttggccaacagccacccagccacagacccagtggaatcctggatattcgtcacatgct
ggatatgctgcatatggaagttatgcaaattctggccagccacaagttgctacatcagct
cctcagagtgctgcttacggtgcttatccacctacataccaggctcatcctcaactgggt
tatgcgcagccatcgtcagcagcagtagcaccgggttttcctcctcagccagtagcagcc
ccacagccatattatggcagctattga
DBGET
integrated database retrieval system
