Zingiber officinale (ginger): 121985221
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Entry
121985221 CDS
T08725
Name
(RefSeq) serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like
KO
K04354
serine/threonine-protein phosphatase 2A regulatory subunit B
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121985221
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
zof01009
]
121985221
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121985221
03036 Chromosome and associated proteins [BR:
zof03036
]
121985221
Protein phosphatases and associated proteins [BR:
zof01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
121985221
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
121985221
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
121985221
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
WDR55
Beta-prop_EML
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_2nd
ComGF
Motif
Other DBs
NCBI-GeneID:
121985221
NCBI-ProteinID:
XP_042394466
LinkDB
All DBs
Position
5B:complement(102387339..102405296)
Genome browser
AA seq
515 aa
AA seq
DB search
MNGDGADDGGQEVASSSIPPPLDWKFSQVFGERMVGEDVQEVDIISAIEFDKSGDHLATG
DRGGRVVLFERTDAKNHGSRKDLERQDYPFSRHAEFRYKTEFQSHEPEFDYLKSLEIEEK
INKVRWCQTANGALFLLSTNDKTIKYWKVQEKKVKQVSEMNLDATMVVGNGCSDTSTTSN
VRPRFPNGCSRSSFNYLNTDLSFPPGGFPSLRLPVVTSQEKSLVARCRRVYAHAHDYHIN
SISNNSDGETFISADDLRINLWNLEISSQSFNIVDVKPTNMEDLTEVITSAEFHPIQCNM
LVYSSSKGSIRLIDLRQSALCDNHSKLFENHEAPASRSFFTEIIASISDVKFAKDGRHIL
SRDYMTLKLWDINMDSAPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGFRVATGS
YSNLFRVFGCDPGSDEATILEASKNPMRQQVQDPTRTSRSLGSFTHGVRRGAENPNVDAN
GNSFDSTIKLLHLAWHPTENLIACAAANSLYMYYA
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atgaacggggacggtgccgatgatggcgggcaggaggtggcgtcgtcttccattccgccg
cccctcgattggaagttctcgcaggtcttcggggagcgcatggtcggggaggatgttcag
gaagtggatatcatctcagcaatagaatttgataaatctggagatcatcttgcaactgga
gatagaggaggtcgtgttgttttatttgagagaacagatgctaaaaaccatggctctcgg
aaggatttggagaggcaagattatccatttagcaggcatgctgagtttcgctacaaaact
gaatttcagagccatgaaccagagtttgactatcttaaaagcttggaaatagaggagaag
atcaataaagtcagatggtgtcaaacagctaatggtgctctattccttctctcaactaat
gacaaaacaatcaaatactggaaggtacaagaaaagaaggtcaaacaagtttctgagatg
aatttggatgctaccatggttgtgggaaatggttgctctgatacctcaaccacaagtaat
gttagaccgagatttcctaatggatgttccagaagctctttcaactatctgaacactgat
ttgtctttcccaccgggaggatttccatcactacgcttgccagtggtaactagccaagag
aagagccttgttgcgagatgtagaagggtatatgctcatgctcatgattaccacataaac
tccatttcaaataacagtgatggtgagacatttatatcagcagatgatcttcgaatcaat
ctatggaatttggaaattagcagccagagctttaatattgttgatgtgaaacccacaaat
atggaggacttgactgaggttataacttctgctgaatttcatccaatccagtgtaatatg
ctggtatatagtagctcaaagggttcaattcgtcttatagacttgcgccaatcagcacta
tgtgataatcattctaagttgtttgagaatcatgaagcaccagcttcaaggtcttttttc
actgagatcattgcctcaatttcagatgtcaaatttgctaaggatggaagacacatctta
agtcgggattatatgactctcaagctttgggatataaatatggattcagctccagttgca
acctttcaggttcatgagtacttgaggcctaagttatgtgatttgtatgagaatgactca
atttttgacaaatttgagtgttgtcttagtggagacgggttccgtgtggcaactggttca
tacagtaatctttttcgtgtatttggctgtgatcctgggagtgatgaagcgacaattttg
gaagctagtaaaaatccaatgaggcaacaagttcaagatcctacaagaacttccagatct
cttggcagcttcacacatggcgtgagacgaggagcagaaaatccaaatgtcgatgccaat
ggaaactcatttgactccacaatcaaattacttcatctagcctggcatccaactgaaaac
ttgatagcttgtgctgctgcaaacagcttgtacatgtactacgcatga
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