Zingiber officinale (ginger): 121985222
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Entry
121985222 CDS
T08725
Name
(RefSeq) H/ACA ribonucleoprotein complex subunit 4-like
KO
K11131
H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
121985222
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
zof03009
]
121985222
03032 DNA replication proteins [BR:
zof03032
]
121985222
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
Sno RNPs
Box H/ACA snoRNPs
121985222
Prokaryotic type
121985222
DNA replication proteins [BR:
zof03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
Dyskerin complex
121985222
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DKCLD
TruB_C_2
PUA
TruB_N
UPF0113
Motif
Other DBs
NCBI-GeneID:
121985222
NCBI-ProteinID:
XP_042394470
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Position
1B:152220129..152222302
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AA seq
621 aa
AA seq
DB search
MSSQGSQIPSSSPPTTEKKGKTKKSSDNATPSANDGHLYLAPSAVVSSEGDQVKDFFIKP
QSFTPSVDTSAWPILLKNYDRLNVRTGHYTPLPAGHSPLKRPLAEYLRYGILNLDKPSNP
SSHEVVAWIKRLVRAEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLH
SAVPDVAKVARALETLTGAVFQRPPLISAVKRELRIRTIYESKLLEYDPDRHLVVFWISC
QAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDNMVTMHDVLDAQWMYDNFKDES
YLRRVVMPLEVLLTSYKRVVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKG
EAVALGVAEMTTSVMATCDHGSVAKIKRVVMDRDTYPRKWGLGPRALMKKKMVAEGLLDK
HGKPNEKTPAEWLRNVVLPTGGDSMVAGLAAAPEPMVKMEMVIEEVTEEKKKKRKHKDKD
DDLTDGWKHKVEDAGEPPASKKVKVEEVAEDAVLDSEAKTAKKNEDEVEEASKQKSEKKK
KKSETESGEVELADAEKSSKKKEKKEKRNKSKSEAGYSDEEKLTEKKKKKNKEDMGGEEA
ALAGNTEKSEEKKKKKKKHDS
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctcaaggatcccagattccctcgtcttctccaccaaccaccgagaagaagggg
aagactaaaaaaagctcggacaacgccacgccctctgccaacgacggccatctctatctc
gccccttccgccgtcgtctccagcgaaggcgaccaagtcaaggacttcttcatcaagcct
cagtccttcactccctccgtcgacacctcggcctggccgatcctcctcaagaactacgat
cgcctcaacgttcgcaccggccactacacgccactccccgccggccactcccccctcaaa
cggccgctcgcagagtatctccgctatggcatcctcaacctcgacaagccctctaacccg
tcctcccacgaggttgtcgcgtggataaagcgcctagttcgtgccgagaagaccggccac
agcggtaccctcgaccccaaggtcactggcaacctcattgtatgtatagatcgcgccact
cgtctcgtcaaatcccagcaaggtgctggaaaggagtacgtctgcgtcgcccgactccac
tctgccgtccctgatgttgccaaggtcgctcgtgcccttgagaccctcactggcgccgtc
tttcagcgtcctcctcttatttcggccgtcaagcgtgagcttcgcatcagaaccatatac
gagagcaagctgcttgagtatgaccctgaccggcacttggtcgtcttctggatctcatgc
caggctggaacgtatgtccgtactctctgcgtccatcttgggctgatccttggtgttgga
gggcatatgcaggagttgcggcgcgtccgctctggcatcctcggtgagaaggataacatg
gtgaccatgcacgatgtgttggacgcgcagtggatgtatgacaacttcaaggatgagagc
tacttgaggcgggttgtgatgccactggaggttctgcttactagctacaagagggtggtt
gtcaaggattctgctgtaaatgccatttgctatggtgccaaactgatgattcctggtctt
cttagattcgagaacgatattgaggttggagaggaagtggtactgatgacaacgaaaggt
gaagcggttgctcttggagttgctgagatgacaacttctgttatggcaacatgtgaccat
ggatcagtggccaaaataaaacgagtggtaatggaccgggatacttacccccgcaaatgg
gggttgggcccaagagctctgatgaagaagaagatggttgctgaggggctgttggataag
cacggaaagccgaatgagaagaccccagctgagtggctaagaaatgtagtgctgccaact
ggtggagattcaatggtcgctggtctcgctgctgcacctgagcctatggtgaagatggaa
atggtgattgaagaagttacagaggagaagaaaaagaaaaggaaacacaaggataaggat
gatgatctcactgatggatggaagcacaaggtggaggatgctggagaaccaccggcttct
aagaaggtgaaggtcgaagaagttgctgaggatgctgttttggattctgaagcaaagacg
gcgaagaaaaatgaagatgaggttgaggaagcatcgaagcagaagagtgaaaagaagaaa
aagaagtccgaaacagagtcgggagaagtagaattagctgatgctgagaagagttccaag
aagaaagaaaagaaggaaaagagaaataaaagtaaaagtgaagctggttattctgatgaa
gagaaattgactgagaagaagaaaaagaagaataaagaggacatgggtggtgaagaagct
gcattggcaggcaacacagagaaaagtgaggagaagaagaagaagaaaaagaagcacgat
tcatga
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