Zingiber officinale (ginger): 121985259
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Entry
121985259 CDS
T08725
Name
(RefSeq) elongator complex protein 2-like isoform X1
KO
K11374
elongator complex protein 2
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
zof03016
]
121985259
Transfer RNA biogenesis [BR:
zof03016
]
Eukaryotic type
tRNA modification factors
Elongator complex
121985259
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Beta-prop_WDR5
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_Aladin
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_HPS5
NBCH_WD40
Beta-prop_IFT140_1st
WD40_RFWD3
Beta-prop_IFT122_1st
Beta-prop_NUP159_NUP214
Beta-prop_WDR11_1st
WD40_MABP1-WDR62_1st
Motif
Other DBs
NCBI-GeneID:
121985259
NCBI-ProteinID:
XP_042394527
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Position
5B:complement(104577323..104607919)
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AA seq
830 aa
AA seq
DB search
MTLSVEPAFVGAGCNRIVNNVSWGPSGLVAFGAQNAVAVFCPQSAQILTTLPRHKAVVNC
TLWLPSNKDAHKVLNAEVHYLLSGSSDGLLVVWEMHLKRREWRSVLQVSERHKKGITCLS
GLMISPTKAMFVSTSSDALICTWELIFPSSMSGDCKISCLESFSVGSKPMVALSLAVLPG
DTGKVILAMGGLDQKIYIYLGQFTGKFVRVCELKAHTDWIRSLDFSLPVCLDGQKESLFL
VSSSQDRSIRIWKMVMCSSLANPQMPLRKERIGLASYIEGPLFMADSNSYQVSLESLLVG
HEDWVYSVEWQPPFFDGSKAHQPMSILSASMDKTMMIWRPEESTGIWLNVVSVGELSHSA
LGFYGGHWASDGESILAHGYGGSFHLWRNTGVDYENWKPQNVPSGHFASVSDIAWSKNGE
YILSVSHDQTTRVFAPWHSEASLEERISWHEIARPQVHGHDINCVAIIQGSGNHRFVSGA
DEKVARVFESPLSFLKTLNHAIQKSCCFEDICEVQVLGANMSALGLSQKPIYAHATGEVP
SRLQNDVADSLETIPDAVPAVLTVPPVEEQLAYHTLWPESHKLYGHGNELFAICCDHKGM
LVASSCKAQSVAVAEIWLWKVGSWKAVGRLQSHNLTVTQMEFSHDDSFLLSVSRDRHFSI
FSIDNSGETSYRLVAKHEAHKRIIWACSWNPFGNQFATGSRDKTVKVWAIEGGSSVKQLC
ILPQFHDSVTALAWLGIDRSRNAGTLAVGMDNGLLELWSVSGGQITVGDSESPPFGAVLA
IRLSPFLCHVSTVLRLAWREPESHGGDPSLMELASCGADQTVRVFKVFDH
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgacgctctctgtagaacctgccttcgttggcgccggttgcaaccgcatcgtgaacaat
gtttcctggggtccctcaggcttggtggccttcggcgcccagaacgccgtcgccgtcttc
tgcccgcagagtgctcagatattgactacgcttccaagacacaaggctgttgttaactgc
acgctatggcttccctcgaacaaagatgcccacaaagttctaaatgcagaggtgcattat
ttgctctcaggaagttctgatggtctacttgtggtgtgggaaatgcacctcaaaagaaga
gagtggagaagtgtattacaagtatcggaaaggcataagaaaggcattacatgtctaagt
ggattgatgatttctcctactaaggctatgtttgtttctacttcttcagatgctctcatt
tgtacatgggaactgatttttccatccagtatgtcaggggattgcaaaatttcctgtttg
gagtctttctctgtgggttcaaagcctatggttgcactgtccttggctgtcttaccagga
gacacaggcaaagttattttagccatgggaggactagaccaaaagatttatatttacctt
ggccagtttactggaaaatttgttcgtgtttgtgagctaaaagctcatacagactggata
agaagtttggatttctctttaccagtttgtttagatggacaaaaagaaagtctttttctt
gtaagttcatctcaggacagaagcatacgaatatggaagatggttatgtgtagttcttta
gctaatcctcaaatgccactgaggaaagaaagaattggcttggcatcatacatcgaaggc
cctttatttatggccgattctaattcctaccaggtttccctggagtctttgcttgttggg
catgaagattgggtatattctgtcgagtggcaacctcctttttttgatggaagtaaagct
catcaacctatgagtattttgtctgcatctatggataagacaatgatgatatggagacct
gaagaaagcaccggtatctggctaaatgtggtctctgttggtgagttaagtcattcagcc
ttgggcttctacggtggccactgggcatcagatggtgagtcaattcttgctcatggttat
ggtggatcatttcatttatggaggaacactggcgtggattatgaaaattggaaaccacag
aatgttccctctggtcattttgcttctgtatctgacattgcatggtccaagaatggtgaa
tatatactttctgtaagccatgaccaaacaactcgtgtgtttgctccctggcatagtgaa
gcatctcttgaggagaggattagttggcatgagattgcacggcctcaagttcatggtcat
gatattaattgtgtggccattatacaagggagtgggaatcatcggtttgtcagtggtgct
gatgaaaaagttgctagagtttttgagtctcctttgtcctttttgaaaacacttaatcat
gcaatacaaaaatcctgctgctttgaagacatttgtgaagtacaggtattgggggctaac
atgtctgctcttggattatcgcagaaacctatttatgcacatgctactggtgaagttcca
agcaggcttcagaatgatgttgcagattctctagaaacaattcctgatgctgtgcctgct
gttttgactgtgcctccagttgaggagcaacttgcatatcatacactgtggcctgaatct
cacaagctttatggtcatggaaatgaattgtttgccatctgttgtgatcacaaaggaatg
ctagttgcttcatcatgcaaggctcaatcagtagctgtggcagaaatatggctatggaag
gttggatcctggaaggctgttggtcgcttgcaatctcacaatttgacagttacacagatg
gaattctcccatgatgactctttccttttatctgtttcaagggatcgccatttttctatc
ttctcaattgataattctggtgaaacaagctatcggctagttgcaaagcacgaagcacac
aagcgaattatttgggcctgttcatggaatccatttggaaaccaattcgcaacagggtca
agggataagactgtcaaggtttgggccattgagggtggctcgtctgtcaagcaactctgc
atcttgccccagttccatgatagtgttacagctttagcttggctgggcattgatcgatcc
aggaatgctggaactctcgctgttggcatggacaatggtctcctagaactctggagtgtc
tctggtggacaaattactgtcggagactcagaatcacccccatttggtgctgttcttgca
atacggcttagcccattcttgtgccatgtctccacagttctccgtttagcctggagggaa
ccagaatcacatggtggcgacccaagcttgatggagcttgcatcttgtggagctgatcaa
actgttagggtattcaaggtgtttgatcattga
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