Zingiber officinale (ginger): 121985647
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Entry
121985647 CDS
T08725
Name
(RefSeq) ruBisCO large subunit-binding protein subunit alpha-like
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121985647
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121985647
03110 Chaperones and folding catalysts [BR:
zof03110
]
121985647
03029 Mitochondrial biogenesis [BR:
zof03029
]
121985647
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
zof04147
]
121985647
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
121985647
Messenger RNA biogenesis [BR:
zof03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
121985647
Chaperones and folding catalysts [BR:
zof03110
]
Heat shock proteins
HSP60 / Chaperonin
121985647
Mitochondrial biogenesis [BR:
zof03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
121985647
Exosome [BR:
zof04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
121985647
Exosomal proteins of other body fluids (saliva and urine)
121985647
Exosomal proteins of breast cancer cells
121985647
Exosomal proteins of colorectal cancer cells
121985647
Exosomal proteins of bladder cancer cells
121985647
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
MatP_C
Motif
Other DBs
NCBI-GeneID:
121985647
NCBI-ProteinID:
XP_042395161
LinkDB
All DBs
Position
5B:120759666..120762800
Genome browser
AA seq
583 aa
AA seq
DB search
MASANAVSTASIFRSSPRQECLRRRWAHGQGPDARRKLVVRAMAKDIAFDQSSRSSLQAG
VEKLANAVGVTLGPRGRNVVLDEYGAPKVVNDGVTIARAIELADPMENAGAALIREVASK
TNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSIKKGIDKTVNGLVEELEKKARPVKG
RADIKAVATISAGNDEFIGTMIADAIDKVGPDGVLSIESSSTFETTVEVEEGMEIDRGYI
SPQFVTNPEKLLVEFENAKVLVTDQKISTIKEIVPLLEKTTQMRAPLLIIAEDITGEALA
TLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAKDLGLLIENVSVEQLGTG
RKITISQSSTTLIAEAASKDEIQARIAQLKKELAETDSIYDSEKLAERIAKLSGGVAVVK
VGAATETELEDRKLRVEDAKNATFAAIEEGIVPGGGAALVHLSTLVPAIKDKIDDADERI
GADIVQKALVAPAALIAHNAGVEGEVVVEKIKDKEWEIGYNAMTDKYENLVESGVIDPAK
VTRCGLQNAASVAGMVLTTQAIVVEKPKPKAPVAEPAEGSLMV
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atggcctccgccaacgctgtctccaccgcctccatcttccgctcctcgccgcgtcaggag
tgtctgaggaggagatgggcgcatggacaagggcccgatgcacgccggaagctcgttgtt
cgagccatggcgaaggacatcgcctttgatcagagctccaggtcgtctctccaggccggc
gttgagaagcttgccaatgctgttggtgttactctcgggcctagagggagaaatgtcgtg
ttagatgagtatggagctccaaaagtggtcaatgacggcgtaactattgcccgtgccatc
gagcttgcagatccaatggaaaatgcaggcgcagctttgattcgcgaggttgctagtaag
acaaatgactcggctggcgatggcaccacaactgcatcagttcttgcacgggaaatcatc
aagttaggtttattgagtgttacctctggtgcaaatcctgtgtccatcaagaagggaatt
gataagactgtcaatggtctagttgaagagcttgagaagaaagcccgacctgtcaaggga
cgtgctgatatcaaagctgttgcaacaatctcagctggtaatgatgagttcataggaact
atgattgctgatgcaattgataaagttggtccagacggtgttctatctattgagtcttca
tccacattcgaaactactgtcgaagttgaagaagggatggagattgaccgaggctatatc
tctccgcaattcgtcacaaatcctgagaaattgctcgttgaatttgaaaatgcaaaagtt
ctagtgactgaccaaaagatttcaacaataaaggagattgtacctttattggagaagacc
actcaaatgagagctcctcttctcattattgcagaggatatcaccggtgaggccctagca
actttagttgtgaataagcttcggggtattctgaatgtggctgcaatcaaagctcctgga
ttcggtgaaagaaggaaggctcttcttcaagatattgccattgttacaggagctgaattc
caagccaaagatcttggcctgttgatcgagaatgtatcggtggaacaacttggcacagga
aggaagattacaatctcccagagctccaccactttgattgctgaggcagcatctaaggat
gaaatccaggctagaatagcccaattaaagaaagaacttgcagagaccgactcaatttat
gattctgagaagctagcggagagaattgccaaactttctggcggcgtggcagttgtgaag
gtaggcgctgcgactgagacagagcttgaagaccgcaaactgcgagtagaggatgccaaa
aatgccacatttgcggccatagaggagggaatcgttcctggtggaggtgctgccctggtt
cacctctccactcttgtgcccgccatcaaagacaagatcgatgatgcagatgagcgcatt
ggagccgacattgttcaaaaggcactggtagctccggcagctttgatcgcacacaatgca
ggcgtggaaggagaggtcgtggtcgagaaaatcaaggacaaggaatgggagatcggttac
aatgccatgactgacaagtatgaaaacttggtggaatctggagttatcgacccggccaag
gttacaagatgcggtctgcaaaatgctgcgtcggtcgccggaatggtgttgacgacgcag
gcgattgtggtggagaagccgaagccaaaagctccggtcgctgagccagcggaagggagc
ctaatggtttaa
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