| Entry |
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| Name |
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD-like
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| KO |
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| Organism |
zof Zingiber officinale (ginger)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:zof00001]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121985655
09124 Replication and repair
03420 Nucleotide excision repair
121985655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:zof03021]
121985655
03036 Chromosome and associated proteins [BR:zof03036]
121985655
03400 DNA repair and recombination proteins [BR:zof03400]
121985655
Enzymes [BR:zof01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
121985655
Transcription machinery [BR:zof03021]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
121985655
Chromosome and associated proteins [BR:zof03036]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
121985655
DNA repair and recombination proteins [BR:zof03400]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
121985655
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
5B:complement(120826401..120843440)
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| AA seq |
760 aa
MKFKIDDVTVYFPYEHIYPEQYEYMVELKRTLDARGHCLLEMPTGTGKTVALLSLIISYS
LSRASNRGPLKLIYCTRTVHEMEKILAELRLFLSHLPSELRSSLLALGLSSRKNLCINPI
ALSAASRDSVDSACRRLTASWVRASAAENPAVPTCDFFESFDRAASSSNAAVLLPSGVYS
LQDLRAVGRERGWCPYFLARQTIHHANVVVYSYQYLLDPKVASIISKEMQKECVVVFDEA
HNIDNVCIEALSVSVRRQTLDGAARNLNRMTQEIDRFKATDATRLRTEYNRLLEGLAQRG
NLALTDAWLGNPALPDDILKEAVPGNIRRAEHFLSVLRRLVQYLNGRLETENVETEGPVA
FVASVNSQAGIDQKMLRFCYDRLHSLMLTLEITDTDEFLHIQTVCDFATLIGTYTRGFSI
IIEPFDQRMPHIPDPVLQLSCHDASIAIKPIFDRFQSVIITSGTLSPIDLYPRLLNFNPV
ISRSFTMSLTRDCICPMILTRGSDQAQITTQFGIRTEEAVVRNYGKLLLEMVSAVPDGIV
CFFVSYSYMDGIINSWNEMGILQDVMQHKLVFIETQDVVETTLALDNYRRACDCGRGAVF
LSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTKSRILLARLEYLRETFQIKEGDFLTFDA
LRQAAQCVGRVIRSKADYGMMIFADQRYNRRDKHSKLPGWILSHLRDAHLNLSTDMAVRI
AREFLRRMAQPYDKAGCGGKKTLLTQEDVERLPHDAMDLF |
|---|
| NT seq |
2283 nt +upstreamnt +downstreamnt
atgaagttcaagatcgacgatgtgacagtgtacttcccctacgaacatatctatccggag
cagtacgagtacatggtggagctgaagcgcaccctcgatgcccgcggtcactgcctcctc
gagatgcccaccggcaccggcaagaccgttgccctactctccctcatcatcagctattcc
ctttcccgtgccagcaaccgtggtccgcttaagcttatctactgcacccgaaccgtccac
gaaatggagaaaatcctcgccgaactccgcctcttcctctcccaccttccctccgaactt
cgcagctccctcctagctctcggactatcctctcggaagaacctatgcatcaaccccatc
gcactctctgcagcctcccgtgactccgtcgactccgcctgtcgccgcctcacggccagc
tgggtccgggcctccgccgccgagaatcctgccgttcctacctgcgacttctttgaaagc
ttcgaccgtgccgcttcctcgtctaatgcggccgtcttgcttccttccggagtgtactcg
ctccaggacctccgtgcagtcggtagagaaaggggatggtgcccctacttcctcgcgcgg
cagaccatccaccacgccaatgtcgtggtctatagttaccaatacttactggaccctaag
gtcgctagcattatatccaaggagatgcagaaggagtgtgtcgtcgtgtttgacgaggct
cacaacatcgacaatgtgtgcatcgaggctctcagcgtcagcgtccgaaggcagacacta
gacggcgcagccagaaatctcaaccgcatgactcaggagatcgataggtttaaggcaaca
gatgctaccagactgcgcacagaatacaatagacttttggaaggactagcacagagagga
aatttagctctaactgatgcctggcttgggaaccctgccctgcctgatgacattttgaag
gaggctgtgcctggaaatataaggagagctgagcattttctctctgttttaagaaggctg
gtgcaatatctgaatggtcgtttggaaacagaaaatgttgagacagaaggacctgttgcc
tttgttgcttcagtgaattcccaggctggaattgatcagaaaatgcttagattctgctat
gatcgcttgcactcactcatgcttacacttgaaataactgacacagatgagttcctgcac
attcagacagtttgtgactttgcaacactaattggtacatatacacggggcttctcaata
atcattgaaccctttgatcagcggatgcctcatattcctgacccagtattgcagctcagc
tgtcatgacgcttctattgcaataaagcccatctttgatcgctttcagtcagtcataatt
acttctggaactctaagccctattgacctatatcctcgtctcttaaatttcaacccagtc
ataagtagaagctttactatgtctttgacaagggattgcatatgcccaatgattctaaca
cgtggaagtgaccaggcgcaaataactacacaatttggcattcgtacagaagaagcagtt
gtgaggaattatggaaaattattgctggagatggtttctgcagttccagatggcattgtc
tgtttctttgttagttactcctatatggatggaatcattaacagttggaatgaaatggga
attttacaggatgtgatgcaacataagctagtatttattgaaactcaagatgtagtagag
actacactggccctcgataactatcgtagagcatgtgattgtggacgaggggctgtattt
ctctcagttgcaaggggtaaagttgctgaaggtatagattttgatcgacactatggaaga
cttgttatcatgtttggagttcctttccagtacacaaagagcagaattttgctcgctagg
ttagagtatttgcgtgagacattccagataaaagagggtgattttcttacttttgatgct
ttgaggcaagctgcacaatgtgttggccgtgtaattcgttcaaaagcagattatgggatg
atgatatttgctgatcaaagatataaccgtcgtgataaacactctaaattgcctggttgg
atactgtcacatttacgtgatgcacatcttaatcttagcactgatatggctgtgcgcata
gcacgagagttccttcgaaggatggcccaaccttacgataaggcaggctgtgggggcaag
aaaactctcctaacacaagaagacgtggaaagactaccacatgatgctatggatttgttt
tag |
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