Zingiber officinale (ginger): 121985659
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Entry
121985659 CDS
T08725
Name
(RefSeq) zinc finger protein GAI-ASSOCIATED FACTOR 1-like isoform X1
KO
K25870
zinc finger protein IDD3/4/5/6/7/8/9/10/11/12/13
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
zof03000
]
121985659
Transcription factors [BR:
zof03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
121985659
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C2CH-4th_BIRD-IDD
C2H2-2nd_BIRD-IDD
C2CH-3rd_BIRD-IDD
zf-C2H2
zf-met
zf-C2H2_jaz
zf-C2H2_4
zf-C2H2_6
zf-C2H2_STOP2_C
C2HC_ASCIZ
Motif
Other DBs
NCBI-GeneID:
121985659
NCBI-ProteinID:
XP_042395178
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Position
5B:complement(120932618..120936079)
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AA seq
546 aa
AA seq
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MASASSSSPFLGIRDQEEELQNQMKTPTTPLQFHQPPRSSSPTSATAVPAVKKRRNQPRD
PTDPDAEVIALSPTTLLATNRFVCEVCNKGFQREQNLQLHRRGHNLPWKLRLKSSKEPPR
RRVYLCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCAKRYAVPSDLKAHAKT
CGTREYRCDCGTLFSRRDSFITHRAFCDVLAQESTRLPNAAGIGGHLYGSNMMAMNLCQV
NSQLLSSLQEQNNDASSSAAAAGAQFRQLVNPPAQFRAPAPANFYLGNGSNVVQDFDMEE
HSLLQRKPFHGLMQLPDLHGNSSSGNLFDLSFFSNSGAVEGCSADPAMMFSSSLVADHAG
GAMASSSLYNADSSTSAHPRMSATSLLQKAAQMGSIETSGGAAAGGSLPLAGFGVAGNPR
PPPHFGGSFNTGDAFHTDMDNATSLQNIMNALANGSAGAGLFGCSAPFVESGPRHEAAVV
ELSSFGGGLDAPDDAEFNLAAGGLAGPDHLTRDFLGVGRTVRTASAGPMSRRELNHGTDM
CAFDPK
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atggcatcagcttcctcgtcgtcacccttcctgggaatcagagatcaagaggaggagctc
caaaatcaaatgaagacaccaacaacaccacttcagtttcatcagccgccgcgatcttct
tctccaacgtcggccaccgccgttcctgcagtgaagaagagaaggaaccagccccgggat
ccaacagatcctgacgcggaggtgatcgccctgtctccgaccacgctgctggcgaccaac
cgcttcgtttgcgaggtgtgcaacaaggggttccagcgggagcagaacctgcagctccac
cggcgcggccacaacctgccgtggaagctccggctgaagagctccaaggagccgccgcgg
cgccgggtgtacctctgccccgagccctcctgcgtccaccacgacccctcccgcgccctc
ggcgacctcaccggcatcaagaagcacttctgccgcaagcacggcgagaagaagtggaag
tgcgacaagtgcgccaagcgctacgccgtcccctccgacctcaaggcccacgccaagacc
tgcggcacccgcgagtaccgctgcgactgcggcaccctcttctccaggcgtgatagcttc
atcacgcatcgggctttctgcgacgtgctcgcgcaggagagcacgagattgccgaacgcg
gccggcatcggcggtcacctctacggaagcaacatgatggctatgaatctatgtcaggtg
aactcgcaattgctctcgtcgcttcaagagcagaacaacgatgcgtcgtcatcggcggcg
gcggccggtgcacaatttagacagcttgtcaatcctccggcccagtttcgggcgccggcg
cctgcgaacttctacctcggtaatggttccaacgtcgtccaggacttcgacatggaggag
cattccttgctacagagaaaacctttccatggcctgatgcaactcccggatctccacggc
aattcttcttccggtaacttgttcgacctcagcttcttctccaatagcggcgccgtcgag
ggctgcagtgccgatccggccatgatgttctctagcagtctggttgcggaccacgccggt
ggagcgatggcttcttcttctctctacaacgccgactcgtcgacgtcggctcacccgcgg
atgtccgccacttcactgctccagaaagcagctcaaatgggctccatcgagaccagcggc
ggcgccgccgcaggtggatccttgccactggcaggattcggcgtcgctggcaaccccagg
ccgccgccacacttcggtggcagcttcaacaccggcgacgcctttcacaccgacatggac
aacgcaaccagcctccaaaacataatgaacgcgctggcaaatggaagcgccggcgccggc
ctattcggctgcagcgcgccgttcgtggaaagcgggccacggcatgaggctgcagtggtg
gaattaagcagcttcggcggcggactggacgctcccgacgacgccgagttcaacctcgcc
gccggcggcctcgcaggccccgatcatctgactagagacttcctcggagtaggccgcacg
gtgaggaccgccagcgccggcccgatgtctcgacgggaactgaatcacggcacggacatg
tgtgcgtttgatcccaaatga
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