Zingiber officinale (ginger): 121985669
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Entry
121985669 CDS
T08725
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121985669
03036 Chromosome and associated proteins [BR:
zof03036
]
121985669
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
121985669
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
121985669
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
121985669
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MOV-10_beta-barrel
AAA_11
Motif
Other DBs
NCBI-GeneID:
121985669
NCBI-ProteinID:
XP_042395205
LinkDB
All DBs
Position
1B:complement(155246669..155252715)
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AA seq
751 aa
AA seq
DB search
MGYFLDVLRFIFRYGDDDDAFDLLNATTSSSSSTSHRVEDLPFLQRNSSSSESYPSTTTL
LYPWKSSVASPPLNASVSPSPALLSRFSTASGPLSSNQPNDSAPKVSSGHSSGASRSSSP
PPKSKTLPLSPQSSSHPSESKTLPFSSQFQQADASRRSSGTTTSKQKHTPDARDGNPELN
GKISAKVPDSTHIWVMHQASTKPSKPSLNASASPLTSSVSSKHPVVADPLSSKCSSVLPA
SSSHGPSTQVLIKRQSTLNYHDKSSLLPSTTLPSNTSNFTDTFASFSQKQQKRTPETNRD
DSTRDYSFQPRPFFEKRTLAEIYEIPEDIEELIKNDKLPAMMPLTPHGYADYFRTLLYAE
DYELEKWSEYLLEGVTLELRENKDSKIHNLREISKTKSSRNDQHSLVAFEIDAVPERRPY
LLSRDFVLVRPSDQISAEPFKGVIVCVVKSRTVLVEFGRDFHKQHSSMKKYNVSFSFNRV
CLKRSHIAISAATNPLLCMILFPNPEGITDYASSDGNMVSPTIQPSIKHHHVIRRILNRK
GLVPYLIEGPLAYEFGELTATGKFIQEAVIQIHRNVVSSKILICTPRNMTCDALMRSLLD
EIPKTKLFRANAAFRDMELVPDDIMPTCLFKGECFTCPPVDELREFNIVSSTYMSSFRLH
NAGIEANHFSHIFLVDASSSMEPEAIVALANLVCEKTVIVITGSMDDFPRWVRSRIGRGG
NGLKRSLFHRLMGIKPYSSMDSNHAARIRSG
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atggggtacttcctcgatgtgttgcgcttcatcttccgctacggagatgacgacgacgct
ttcgatctattaaacgcgacgaccagcagcagcagcagcaccagccatcgcgtcgaggat
ttgccgttccttcaaagaaattcctcatcgtcggagtcgtatccttcaactacgacctta
ctgtatccgtggaagtcttcagtggcttctccgccgttaaatgcttctgtttctccgtcc
cccgctttgctatctaggttttccaccgcctccggtcctctctcatcgaatcagcctaat
gattctgccccaaaagtttcttccgggcactcttccggagcttcccgatcttcttctccc
ccaccgaaatcgaagactttgcctttaagtccacaatcttcttctcacccatcggaatcg
aagactttacctttcagctcacagttccaacaggctgatgccagtaggagatcgtcggga
acaaccacgagcaagcaaaagcacacgcctgacgcaagagacggaaatcctgaactcaat
gggaaaatttctgccaaggtgcctgattccactcacatttgggtcatgcatcaggcctca
acgaagccttctaaaccctccttaaatgcttctgcttctcccttgacctcttcagtctca
tccaaacatcctgtagtcgccgatcctctttcatcgaagtgttcttctgtactccctgcc
tcatcatcgcatgggccttccactcaagtcttgatcaagcgtcaatcgaccttgaattac
catgacaaatcttcgcttttgccatcaactactcttccatcaaatacctccaacttcaca
gatacgtttgcttccttttcccaaaagcaacagaaacggacacctgagacaaaccgtgat
gattctactagggactactcattccaacctcgtccatttttcgaaaaacgcacactcgct
gaaatatacgagattcctgaggatatcgaggagttgatcaagaacgataagttgcctgca
atgatgccattaaccccacacggttatgctgattatttccgtactttgctttacgcagaa
gactatgaactcgagaaatggagcgaatatttattggaaggagttactcttgagttgcga
gaaaataaagactctaaaattcataatttgagagagatttctaagacaaaaagcagtcgg
aatgatcaacattctttggtagcatttgagattgatgctgttcctgaaagaaggccttat
cttttatcaagagattttgtccttgtacggccctcagaccagatatctgcggaacctttc
aagggagtcattgtttgtgtggtaaagagcagaactgttttagtagagtttggacgcgat
tttcacaaacaacattcatcaatgaaaaagtataatgttagcttctccttcaatagagtt
tgcttgaaaagatctcatattgcaatctccgctgcaacaaatcctttgctgtgtatgatc
ctcttcccaaatcccgaaggcattactgattatgcaagctcggatgggaacatggtttct
ccaaccatccagccttccattaagcatcatcatgtaattcgaagaatcctaaaccgtaaa
ggtcttgtcccctatctcatagaaggacccctcgcctacgagtttggggaactcaccgcc
actgggaaatttattcaagaagcagtcatccaaatacacaggaatgttgttagctccaaa
atacttatatgcactcctaggaacatgacgtgcgatgcattaatgaggagtttgctcgac
gagattccaaagaccaagttgttccgagctaatgctgccttccgagacatggaacttgtg
ccagatgacattatgccaacgtgcctgtttaaaggggagtgcttcacttgccctcctgtc
gatgagctcagagaattcaacattgtgtcttccacctacatgagtagtttcagacttcac
aatgctggaattgaagccaaccatttcagtcacattttcttggtggatgcatcttcttcg
atggagcctgaagcgattgtggctcttgcaaatctagtttgtgagaagactgtcatcgta
attacaggttcaatggatgactttccacgttgggtgagatcaagaatagggaggggaggg
aatggactgaagagatcattgttccataggcttatggggattaagccctactcttctatg
gattctaatcatgcagccagaattagatctggctag
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