Zingiber officinale (ginger): 121985680
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Entry
121985680 CDS
T08725
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121985680
03036 Chromosome and associated proteins [BR:
zof03036
]
121985680
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
121985680
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
121985680
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
121985680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MOV-10_beta-barrel
Motif
Other DBs
NCBI-GeneID:
121985680
NCBI-ProteinID:
XP_042395215
LinkDB
All DBs
Position
1B:complement(155326917..155332935)
Genome browser
AA seq
754 aa
AA seq
DB search
MGCFLDVLRCIFCCRDDDDAFDRLNVSRWSSSSTNHWGNYHRVEDFPIRSPLLSRNSSSS
VSYPSTTTLLYPCKPSVTSPPLNASVSPSPSLLSRFSTASGPLPSKQPNDSAPKVSSGAS
RSSSSPPKSKTLPFSPLSSSRPSESKTLPFSSQFQQADASWRSPGTTTSKQKHTPDARDG
NPELNGKISAKVPDSTHIWVTHQATTKPSKPSLNASASPLTSSVSSKHPASSSHGPSTLV
WKKRQSTSNYHDKSSLLSSTTLPSNTSNFTDTFESSFQKQQTRKPEISRHDFTLIFKDYS
SDSSSSTTPHSSEASPFSKKRTLAERYEIPEDIEELIKIDMLPAMMPLNPHGYADYFRIL
LYAEDYELEKWSEYLLEGVTLELREKKDSKIHNLRETSKTKNRRNDQHSFVAFEIEAVRE
RPYLLSRDFVFVQPSDQISAERFKGVIVCVVKSRTVLVEFGRDFHKQHSSTKKYNVSFSF
NRVCLKRSHIAISAATNPLLCKILFPNPKGITDYASSDGNMVSPTIQSSIKHYHVIRRIL
NCKGLVPYLIEGPLAYEFGELTATGKFIQEAVIQIHRNVVSSKILICTPRNMTCDALMRS
LLDEIPKTKLFRANATFRDMELVPDDIMPTCLFKGECFTCPPVDRLREFNIVSSTYMSSF
RLHNAGIEANHFSHIFLVDASSSMEPEAIVALANLVCEKTVIVITGSMNDFPRWVRSEIG
RRRNGLRRSLFHRLMEIEPYSSIDSKHAASIRSG
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atggggtgcttcctcgatgtgttgcgctgcatcttctgctgcagagatgacgacgacgct
ttcgatcgattaaacgtgagtaggtggagcagcagcagcaccaaccactggggaaactac
catcgcgtcgaggattttccgatacgatcgccgttgctatctagaaattcctcatcgtcg
gtgtcgtatccttcaactaccaccttactgtatccgtgcaagccttcagtgacttctccg
ccgttaaatgcttctgtttctccgtccccctctttgctatctaggttttccaccgcctcc
ggtcctctcccatcgaagcagcctaacgattctgccccaaaagtttcttccggagcttcc
cgatcttcttcttccccaccgaaatcgaagactttgcctttcagtccactgtcttcatct
cgcccatcggaatcgaagactttacctttcagttcacagttccaacaggctgatgccagt
tggagatcgccgggaacaaccacgagcaagcaaaagcacacgcctgacgcaagagacgga
aatcctgaactgaatgggaagatttctgccaaggtgcctgattccactcacatttgggtt
acgcatcaggccacgacgaagccctctaaaccctccttaaatgcttctgcttctcccttg
acctcttcagtctcatccaaacatcctgcctcatcatcgcatgggccttccactctagtc
tggaaaaagcgtcaatcgacctcgaattaccatgacaaatcttcgcttttgtcatcgact
actcttccatcaaatacctccaacttcacagatacgtttgaatcttctttccaaaagcaa
cagacacggaaacctgagattagtcgtcatgattttactctgatatttaaggactactct
tccgactcttcatcatctactactccccactcatccgaggcttctccattttccaaaaaa
cgtacacttgctgaaagatacgagatccctgaggatatcgaggagctgatcaagatcgat
atgttgcctgcaatgatgccattaaacccacacggttatgctgattatttccgtattttg
ctttacgcagaagattatgaactcgagaaatggagcgaatatttactggaaggagttact
ctcgagttgcgagaaaagaaagactctaaaattcataatttgagagagacttctaagaca
aaaaaccgtcggaatgatcaacactcttttgtagcattcgagattgaagctgttcgtgaa
agaccttatcttttatcaagagattttgtctttgtgcagccctcagaccagatatctgct
gaacgtttcaagggagtcattgtttgtgtggtaaagagcagaactgttttagtagagttt
ggacgcgattttcacaaacaacattcatcaacgaaaaagtataatgttagcttctccttc
aatagagtttgcttgaaaagatctcatattgcaatctcagctgcaacaaatcctttgctg
tgtaagatcctcttcccaaatcccaaaggcattactgattatgcaagctcagatgggaac
atggtttctccaaccatccagtcttccattaagcattatcatgtaattcgaagaatccta
aactgtaaaggtcttgtcccctatctcatagaaggacccctcgcctacgagtttggagaa
ctcactgccactgggaaatttattcaagaagcagtcatccaaatacataggaatgttgtt
agctccaaaatactaatatgcactccgaggaacatgacgtgcgatgcattgatgaggagt
ttactcgacgagattccaaagaccaagttgttccgagctaatgctaccttccgagacatg
gaacttgtgccagatgacattatgccaacatgcctgtttaaaggggagtgcttcacttgt
cctcctgttgataggctcagagaattcaacattgtttcttccacctacatgagtagtttc
agacttcacaatgcgggaattgaagccaaccattttagtcacattttcttggtggatgca
tcttcttcgatggagcctgaagcgattgtggctcttgcaaatctagtttgtgagaagact
gtcatcgtaattacaggctcgatgaatgattttccacgttgggtgagatcagaaattggg
aggagaaggaatggactgaggagatcattgttccataggcttatggagattgaaccctac
tcttctatagattctaagcatgcagccagtattagatctggctag
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