Zingiber officinale (ginger): 121985707
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Entry
121985707 CDS
T08725
Name
(RefSeq) transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
121985707
03036 Chromosome and associated proteins [BR:
zof03036
]
121985707
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
121985707
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
121985707
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
SPT6_acidic
HTH_44
Spt6_S1
HHH_9
Tex_central_region
SH2
Tex_N
Motif
Other DBs
NCBI-GeneID:
121985707
NCBI-ProteinID:
XP_042395241
LinkDB
All DBs
Position
5B:complement(121927197..121939186)
Genome browser
AA seq
1673 aa
AA seq
DB search
MAGRTVLSDDEEEVEVEEDEEERAMEQDADDVADRDNDDEEDEEEGQDEYEQDGFIVDEV
EEEEEEEEEEKQDSDEERHRKRRKKKRDSEKNYVLDEDDYELLQDNNITGFHRPQPGSKF
KRLKKAGRDNDLEDRSGFSDEEDLDKNSHGSRTAEEKLKRSLFGDDEVVPLEDIAEEEEQ
PEEEEEDADIIGDDDEMADFIVDEEDVDETGAVLRKKKIKKKKPGQAPGVSSSALQEAHE
IFGDVDELLMLRKQSLASSVGDSSWGEKKLEDEFEPFILSEKYMTPKDDSIRETDVPERI
QLSEDITGPPPTDDKSIEEESTWIYSQLTNGGISPLFGYDQFLKEINKEEIGNVLTMIHV
QKFDVPFISMYRKELCHSLLKDPDANVQESEGTPKLKFHKVLWAVQTLDKKWLLLQKRKN
ALQSYYNRRFEEEARRIDNESRLALNQQLFKSITEALRDAKSEREVDDIDAKFNLHFPPG
EVDMEDGQFKKPKRKSLYSMCHKAGLWEVANKFGANSEQFGLLLSLEKISDELEDGKETP
EEIAANFTCTLFETPQDVLKGARHMAAVEIGCEPNVRKHVRSIFMEKAVVSTSPTHEGNT
TIDPYHQLAGVKWLRNKPLSEFSDAQWLLIQKGEAEKLIQVTIKLPDEIQKKLLSDASEC
YLSECVSTSAKLWNVQRKLILEDSFLTFILPIMEKEARSLLTARAKNWLLMEYGKQLWNK
VSIAPFKRKDAENDLEDESESRVMACCWGPGKPATTIVMLDSAGEMVDVLYAGSISVRSQ
AAADQQRKKNDHHRVLKFMTDHHPHAVCVGAANMACRQLKDDIYEVIFKIVEDHPKDVSR
DLENISIIFGDESLPRLYENSRVSSDQLPGQPGIVKRSVALGRYLQNPLAMVATLCGPGK
EILSWKLCPLEHFLTPDEKYEVVEQVMIDATNQVGLDINLAASHEWLCAPLQFISGLGPR
KASALQRAFVRAGSIFNRKEIPMKILRKKVFINGVGFLRVRRSGAAAASSHIMDLLDDTR
IHPESYDLARNLAKDVYAEDAPDEPNDMDDDIQEMAIEHVRERPDMLRLLDINEYAKSIF
DRYGTDKSETLYDIKMELLHGFQDLRKPFKDPSPEEEFAMLSGETDETISLGRIVQVTVR
HVQESRIVCAFDSGLKGMIMSDDYSDEGFDPERIHEGDIITCKIKNVNKNRHVVYLTAKA
SDLRNRPFNIRNRDPYYHEDEISLQSDMEKARKKKELAKKHFKPRMIVHPCFRNVTADEA
IEYLSDKEPGESIIRPSSKGPSFLTLTLKVFDGVHAHKEIVEGGKDHKDITSLLRLGKTL
TIDKDTFEDLDEVMDRYVDPLVTHLKAMLSYRKFRKGTKTEVDDLLRTEKAANPMRIVYS
FGISHEHPGTFILSYIRTSNPHHEYIGLYPNGFRFRKKDFDNIDRLVAYFQKNIDKLPPD
SGPSIRTVAAMVPMKSPAWASSGGGSVASASAGSNDGWRGYNSDRERSTTPGSRTGDRFD
SRSINSRDVHPSGVPRPGRGRGRPHGKGNNYGGIGHDSDYGTPKWSMNENDGLSTFPGAK
VNNSPGKDPWGWGSGGSGRGNITGDSSSGGDWAGGHADRSKGGSREGSGAGGRGRGAWEV
GNGAAPGWAGNVSGRGGWSGGSDFGGRTGEELANPNGSAAGFAASTGWSDSRR
NT seq
5022 nt
NT seq
+upstream
nt +downstream
nt
atggccggacgaacggtgctctccgatgacgaagaggaggttgaggttgaagaggacgaa
gaagaacgagcgatggagcaggatgcggatgacgttgcggacagggataatgatgatgaa
gaagatgaggaagagggccaggatgaatacgaacaggatggattcatagtggatgaagtg
gaagaagaggaagaggaggaggaagaggagaagcaggatagtgatgaggagaggcataga
aaaaggaggaagaagaaaagagattcggagaagaactatgttcttgatgaggacgattac
gagttgctccaggataacaacataactggcttccatcgaccccagccgggtagcaaattt
aagcgtttgaagaaggctggaagggataatgacttggaggatcgatctgggttttcagat
gaagaagacttggataagaacagccatggtagccgcacagctgaagagaaacttaaacgt
agtttgtttggggatgatgaagtggtgccacttgaggacattgctgaggaagaggaacag
ccagaagaagaagaagaagatgcagacatcattggtgacgatgatgaaatggcagatttt
attgttgatgaagaagatgttgatgagactggtgctgttttaagaaagaaaaagataaag
aaaaagaagccaggccaagctccaggagtttcatcttctgctctacaagaagctcatgag
atatttggtgatgttgatgagcttctaatgctccggaagcaaagtctagcctccagtgtt
ggcgatagtagttggggtgaaaagaagctggaggatgagtttgaaccttttattctttca
gagaagtatatgaccccaaaggatgacagtatacgagaaacagatgtacctgagagaatt
cagctgtctgaagatattactgggccacctccaacagatgataagagtatagaagaggag
agtacctggatctacagccaacttacaaatggtggtatctctcctctatttggttatgac
cagtttctcaaagaaataaacaaagaggaaattggaaatgtattgacaatgattcatgtg
cagaagtttgatgttcctttcattagcatgtatcgcaaggagttgtgtcatagccttttg
aaggatcctgatgccaatgtgcaggagagtgaaggtactccaaagctgaaatttcataag
gttctttgggcagttcaaaccttggacaaaaaatggttgttgcttcagaaaaggaagaac
gcccttcaatcctactataacagacgctttgaagaagaagcccggagaattgataatgaa
tctagacttgcgttgaatcaacagctttttaaatcaatcactgaggcattaagggatgca
aaatcagaaagagaggttgatgatattgacgcaaagttcaatctacattttccacctggc
gaagttgatatggaggatgggcaatttaagaaaccaaagagaaaatcattgtacagcatg
tgccacaaagctgggctttgggaagttgccaacaaatttggtgcaaattctgaacaattt
ggtttacttctctcgttagaaaagatatcagatgaattggaagatggaaaagaaacacct
gaagaaatagctgcaaattttacatgcacactgtttgaaactcctcaagatgtgcttaaa
ggagctaggcacatggcagctgtagagattggctgtgagcctaatgttagaaaacatgtg
cgcagtatctttatggagaaggctgttgtgtcaacaagccctacccatgaaggaaatacc
acaattgatccttaccatcaacttgcaggtgtcaagtggcttcgcaacaagccattgtct
gaatttagtgatgcacagtggttacttatccaaaaaggtgaagcagagaaactgattcag
gtcacaattaaattacctgatgaaattcagaagaaattgttatcggatgcttctgaatgt
tatcttagtgaatgtgttagtacatctgctaaactttggaatgtgcaacggaaactgata
ttggaggattcatttctcacttttattcttccaataatggaaaaggaagctcggtcactt
ttgactgctagggcaaaaaactggcttcttatggaatatggaaaacaattatggaacaaa
gtctccattgcgcctttcaaacggaaggatgcagagaatgatttggaagatgagtctgaa
tcaagagtaatggcttgttgttggggtcctggcaagccagctactacaattgttatgttg
gattcagcaggcgaaatggtggatgtattatatgctggttcaataagtgttcggtcccag
gctgccgctgatcaacagagaaagaaaaatgatcaccaccgagttttaaagttcatgaca
gatcaccatcctcatgctgtctgtgttggagcagcaaacatggcctgcaggcaactaaag
gatgatatatatgaagttattttcaagatagtagaggatcatccaaaggatgtaagtcga
gatttggaaaacatcagtattatttttggtgatgaatccttgccacgtctttatgagaat
tcaagggtttcttcagatcaacttcctggtcaacctggtattgtgaagcgttctgttgct
cttggtcgatacttgcaaaaccctctagccatggttgctacactttgtggaccaggaaaa
gagatattgtcatggaaactttgtcccctggagcatttccttacaccagatgaaaaatat
gaagttgttgagcaggttatgattgatgctacaaaccaagttggccttgatataaacttg
gctgctagccatgaatggctttgtgctcctctacaattcatttctggtctcgggcctcga
aaagcatctgcgttacaaagagcatttgttcgggctgggtctatttttaaccgtaaggag
atacctatgaaaattcttagaaagaaagtgttcattaatggtgttgggtttttacgtgtc
cgtcgaagtggtgcagcagcagctagtagtcatattatggaccttttggatgatacaaga
attcatccagagtcctatgatctggcaaggaatctggcaaaggatgtctatgctgaggat
gctccagatgaaccaaatgatatggatgatgatatacaggagatggcaattgaacatgtt
agggaaaggccagacatgcttaggttgcttgatatcaatgagtatgccaagagtattttt
gataggtatgggactgacaaaagtgagaccttgtatgatataaagatggagcttctgcat
ggattccaggatttgcggaaaccatttaaagatccaagtccagaggaggagtttgctatg
ctctccggtgaaacagatgagacaatctcccttgggcggattgttcaggttacagtgcgt
catgtgcaagagagccgtattgtttgtgcatttgattctggtttgaaaggtatgattatg
tctgatgactactcggatgaagggtttgatcctgaaaggatacacgaaggtgatataatt
acctgcaagattaagaatgttaacaagaataggcatgtggtttacttaactgctaaggct
tctgatttgaggaataggcctttcaacatccgtaatcgtgacccttactatcatgaggat
gagattagtttgcaaagtgatatggagaaggctagaaagaagaaggaacttgcaaagaag
cattttaaaccaagaatgattgttcacccttgcttccggaatgtcactgccgatgaagca
atagagtacctatctgataaggaacctggtgagagcatcatcagaccaagttctaagggg
ccatcatttttaactttgactttaaaggtttttgatggagtgcatgctcacaaagaaata
gtggagggaggaaaagatcacaaagatattaccagtttactacgcttagggaagacccta
acaattgataaagatacctttgaagatcttgacgaggttatggacagatatgttgatcca
ttggtaactcacctgaaagccatgctttcttaccgcaaattcaggaaagggacaaagaca
gaagttgacgatttgttaagaactgaaaaggcagcaaatcctatgaggatagtgtactcg
tttggcatttcacatgagcatccagggactttcattttgtcctatattaggacttctaat
ccacaccatgagtacatagggctgtacccaaatggttttagatttcggaaaaaggatttt
gacaatattgatcgtttggtggcgtattttcagaagaacatagacaaattaccacctgat
tctggcccatccatacgaacagttgctgcaatggtacccatgaaaagccctgcatgggct
tcctctggtggtggatctgtagccagtgcttcagctggcagtaatgatggctggaggggt
tataattcagaccgggaaagatcaacaactcccggttctagaacaggtgacagattcgac
tccaggagcatcaacagtcgagatgtccatcctagtggggttccacgtccaggccgagga
cgggggcgaccacatggaaaaggaaataattatggcggcattggacacgattctgattat
ggcacaccgaagtggagcatgaacgaaaatgatggcttgagcacctttcctggtgcgaaa
gttaacaactcccctggaaaggatccttggggatggggcagcgggggcagtgggagaggc
aacatcactggtgatagcagcagtggtggtgattgggcaggaggccatgcagatagaagc
aagggaggttcgagggaaggcagtggcgcagggggcagaggtaggggtgcctgggaggtc
ggaaatggtgctgctcctggctgggccgggaatgtcagtggccgaggtggctggagtgga
ggcagtgattttggtggcagaactggagaggaattagcaaatcctaatggttcagccgca
ggcttcgcagctagcactggatggagtgattctaggaggtga
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integrated database retrieval system
