Zingiber officinale (ginger): 121985736
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Entry
121985736 CDS
T08725
Name
(RefSeq) COP9 signalosome complex subunit 5-like
KO
K11864
BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121985736
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
zof01002
]
121985736
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
121985736
03036 Chromosome and associated proteins [BR:
zof03036
]
121985736
03400 DNA repair and recombination proteins [BR:
zof03400
]
121985736
Peptidases and inhibitors [BR:
zof01002
]
Metallo peptidases
Family M67
121985736
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
121985736
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
JAMM
121985736
BRISC complex
121985736
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
BRISC complex
121985736
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
121985736
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCC36_C
JAB
Prok-JAB
UPF0172
Motif
Other DBs
NCBI-GeneID:
121985736
NCBI-ProteinID:
XP_042395286
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All DBs
Position
5B:complement(122565130..122578383)
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AA seq
430 aa
AA seq
DB search
MSLGSVKMAEEVWLTCLTHALTTETEEIMGLLLGDIQYSDGGHATALIWGASPQMRSDRR
KDRVETNPELLAAASAQAERMTLVTGKTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLD
NGFLGLIFSCYSEDSLKVGRIQVIAFQSMDGKQRQVPLNTNSSIIEVETSWTSSENSMSP
FNSSLIKNTEQDTGDSRASKSTRVGGRSPELGELFSHADVDYSAKQRARESSLTVYNEGN
VTNAGASLDSSDMTPSMQEALHRSNMDMSGAEYVRKEVPLQVLPARYLWSLDSPLSSFTD
MQHVLFEEERSAYKQAILQNMRDGRIHPLNYIHHTSTYQASLCKLMEYCLNPAISILQDR
LKENEIKLATLMEEAKSLESVAQSVKSGIKSENPHHRGNRSSAAVPTTKESQDSAGPRSP
SSIGSRRKVP
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctagggtcggtgaagatggcggaggaggtgtggctcacttgtctcacccacgca
ctgaccaccgagaccgaggagatcatgggcctcctcctcggtgatatccaatattcagat
ggtggtcatgcaactgcacttatctggggagcatcaccacagatgcgatctgaccgtcgt
aaagaccgtgtggagactaatccggagttgcttgctgctgcttcagctcaagctgagaga
atgactttggtaacaggaaaaacaacaagggtcattggctggtaccattctcatcctcac
attacagtccttccatctcatgtagatgttagaactcaggcaatgtatcaacttctggac
aatggtttccttggtttgatattttcttgttatagtgaagattccctgaaggtgggaaga
attcaagtaattgctttccaatctatggatggaaaacagagacaagttccattgaatacc
aacagctccatcatagaagtcgaaacatcttggacttcctcggagaatagcatgtcacca
ttcaattccagtttaatcaagaacactgaacaggatactggagattctagagcatccaaa
agtactagggtcgggggaagatctccagagctaggggaactattttctcatgctgatgta
gattattcggcaaagcaaagggcaagagaaagctctctgactgtttacaatgaaggtaat
gtaactaatgcaggtgccagcttagattcttccgatatgactccaagcatgcaggaggca
ttgcatcgttcaaacatggatatgagtggtgcagagtatgttaggaaggaagtaccactt
caagttttgccagctagatatctctggagtctcgactctcccttgtcatcatttacagac
atgcagcatgtattatttgaggaagaacgatcagcatataagcaagccatacttcaaaac
atgcgtgacgggagaatacaccccttgaattatattcatcacacttctacatatcaggct
tcactttgtaaactgatggaatattgcttaaacccagcaatcagcattctgcaagaccgt
ctgaaggaaaatgaaatcaagctagctacgctaatggaggaggcgaaatctctggagtcg
gtcgcacaaagtgtgaaaagtggcattaagtccgagaatcctcaccatcgtggaaatcgt
agcagtgccgccgttccaacgactaaggagtcacaggattctgctggtccgaggagcccc
agtagcattggcagcaggagaaaggttccatga
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