Zingiber officinale (ginger): 121985813
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Entry
121985813 CDS
T08725
Name
(RefSeq) ISWI chromatin-remodeling complex ATPase CHR11-like
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121985813
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
121985813
03036 Chromosome and associated proteins [BR:
zof03036
]
121985813
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
121985813
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
121985813
RSF complex
121985813
WICH complex
121985813
B-WICH complex
121985813
NORC complex
121985813
BRF complex
121985813
NuRF complex (fruit fly)
121985813
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
Helicase_C
ResIII
HAND
HDA2-3
DEAD
Myb_DNA-binding
DBINO
Ribosomal_L27A
CHDII_SANT-like
AAA_14
ToxN_toxin
Motif
Other DBs
NCBI-GeneID:
121985813
NCBI-ProteinID:
XP_042395406
LinkDB
All DBs
Position
5B:complement(125382540..125395493)
Genome browser
AA seq
1072 aa
AA seq
DB search
MAKPYDSGTSSEGTASNVSIASEDEGRNGEEANLDEEIDEEELEAVARTASPDEDEAKDD
SGAEDAKDDDGDEYGEEEKFEIGKRERERLREMQRIKKQKIQEILDEQNANINADMNNKG
QGRLKYLLQQTEIFAHFAKGAQSTSEKKPRGRGRHASKITEEEEDEEYLKEEEDALAGAG
GTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEF
RGITGPHMVVAPKSTLGNWMREIRRFCPILHPIKFLGDPEERKHIRENLLVAGKFDVCVT
SFEMAIKEKNALRRFSWRYVIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLH
ELWALLNFLLPEIFSSSETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP
PKKETILKVGMSQMQKHYYRALLQKDLEVINAGGERKRLLNIAMQLRKCCNHPYLFQGAE
PGPPYTTGEHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLLYRGYQYC
RIDGNTGGDERDASIEAFNQPGSQKFIFLLSTRAGGLGINLATADVVILYDSDWNPQVDL
QAQDRAHRIGQKKEVQVFRFCTEYAIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDE
LLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEMTAELDVKMKKFTEDAIKFKMDDTAD
LYDFGDEKDDNKVDFKKIVADNWVEPPRRERKRNYSDADYFKQTMRQGASAKSKEPRIPR
MPQLHDFQFFNTQRLSELYEKEVRYLMQSHQKNQLKDTIGEEEEAEDLEDPLTAEEQAEK
EQLLEEGFSTWTRKDFNTFTRACEKYGRNDIRNIASEVEGKTEEEVERYVTVFRQRYKEL
NDYDRIIKNIERGEARISRKEEIMRAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRF
MLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDE
RERQARKDKKHSRTPTKRLSKGQANETPALTSFKKRKQSSMDDYMGSGRRRR
NT seq
3219 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaccctacgattcggggacttcctcggagggaaccgcctcgaacgtctcgatc
gcctcggaggatgagggcaggaatggagaggaggccaatctcgacgaggagatcgacgag
gaagaactcgaggctgtcgccagaacggctagccccgacgaagatgaggctaaggatgac
agcggcgctgaagacgccaaggacgacgatggtgatgagtatggcgaggaagaaaaattt
gaaattgggaagcgtgaaagagaaagattaagagagatgcagcggataaaaaaacagaag
attcaagagatacttgatgaacagaatgctaatattaatgctgacatgaacaacaaggga
caagggcgtttgaagtacttgctgcaacagactgagatttttgctcactttgcaaagggt
gctcaatctacatcagaaaagaagccaagaggaagggggcgccatgcatctaaaataact
gaggaagaagaagatgaagaatatcttaaggaggaagaagatgctcttgctggtgctgga
gggacccgtttggtcacacagccatcttgtatacagggaaaaatgagagattatcagtta
gctggattgaattggctaataagattgtatgagaatggaattaatgggattctagctgac
gaaatgggtcttggaaagacattgcaaactatctctctacttggctatttgcatgaattt
agaggaattactggtcctcacatggtggtagcaccaaaatctactctcggcaactggatg
agggaaattcgccgcttctgtccaattctgcaccctataaaatttcttggggatcctgaa
gaaagaaaacatattcgtgagaatctgttggtggctgggaagtttgatgtctgcgtaact
agttttgaaatggctatcaaagaaaagaatgctttaagacggtttagctggcgctatgtg
atcattgatgaagctcatcggataaagaatgaaaattctcttctttctaaaacaatgaga
ctctacaatactaattaccgccttcttatcaccggaacaccacttcagaacaacctgcat
gagctttgggctcttcttaattttctgcttcctgagatatttagttcttctgaaactttt
gatgaatggttccaaatatctggggaaaacgatcagcaggaggttgtccaacagcttcat
aaggttcttcgcccgtttcttttgagaagacttaaatctgatgttgaaaaaggtttgcct
ccaaaaaaggaaactatactcaaggtaggaatgtcccagatgcaaaagcattattaccgt
gctctgcttcaaaaagacttggaggtcattaatgctggaggggagcgcaagcgtcttctg
aacattgctatgcaactgcgcaaatgctgcaatcatccatatctgttccaaggtgcagag
cctggaccaccttatacaactggagaacatcttatcacaaatgcaggaaaaatggttctg
ttagataagctgttgcctaaactaaaggagcgggattccagggttctaatattttcacag
atgactagactattggacatattggaagattatttgctatatcgtgggtaccaatattgc
cgaattgatgggaatactgggggagatgagcgggatgcttcaattgaagcctttaatcaa
cctggaagccaaaaatttattttcttgctttctacaagagctggtggactgggaattaat
ctagctactgcagacgttgtcattctctatgacagtgactggaatccgcaagttgattta
caagcacaggatcgtgctcatagaattggccaaaagaaagaagttcaagtgttccgtttc
tgtaccgagtatgctattgaggagaaagtgatagaaagggcatacaaaaagcttgcactt
gatgccttagttattcaacaaggaagattagcagaacagaaaactgttaacaaagatgag
cttctacaaatggttagatttggtgctgaaatggtctttagctccaaggacagcacaatt
actgatgaggacattgatcgtatcatagctaaaggagaagagatgactgcagaacttgat
gtaaaaatgaaaaagtttacagaggatgccataaagtttaagatggatgacactgctgac
ttgtatgattttggcgatgagaaggacgataacaaggttgactttaaaaaaatagttgct
gataactgggttgaaccacccaggagggaaagaaaacgcaattattctgatgctgattat
ttcaagcaaacaatgcgacaaggtgcttctgcaaaatctaaagagccacggattcctcgt
atgcctcaattacatgattttcagtttttcaacactcagaggttaagtgagttgtatgag
aaagaagtacgatatctcatgcaatctcatcaaaaaaatcagctaaaagatactataggt
gaagaggaggaagctgaagatttggaagatccattgactgcagaggaacaagcagagaag
gagcaacttcttgaagaggggttttcaacgtggacacggaaagacttcaatactttcact
cgagcgtgtgagaagtatgggcgcaatgacattaggaatatagcgtcagaggtggagggg
aaaacagaagaagaggttgaaagatatgtcactgtcttcagacagagatacaaagaatta
aatgactatgaccgtatcatcaagaacatagagaggggtgaggccagaatctcacgaaaa
gaagagataatgagagcaatcggcaagaagttggaccgctataagaacccatggttggaa
ctaaagattcaatatggtcagaataaaggaaaattgtataatgaagaatgtgatcgtttc
atgctgtgcatggtgcacaaacttggttatggcaactgggatgagctcaaggcagcattt
cgcacctcacctttgtttcgatttgattggtttgtcaagtcccggacaactcaggaactt
gctagacgctgtgatacccttatccggctcgtggagaaagaaaaccaagaatacgacgag
agggaaagacaggcacggaaggacaaaaaacattctaggacaccaacaaagcggttatca
aagggacaggctaacgagactcctgccttgacttcctttaaaaagagaaaacaatcatcc
atggacgactacatgggctcggggaggcggcggcgatga
DBGET
integrated database retrieval system
