Zingiber officinale (ginger): 121985862
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Entry
121985862 CDS
T08725
Name
(RefSeq) pre-mRNA-processing factor 19-like isoform X1
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
zof04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121985862
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121985862
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
121985862
04121 Ubiquitin system [BR:
zof04121
]
121985862
03400 DNA repair and recombination proteins [BR:
zof03400
]
121985862
Enzymes [BR:
zof01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121985862
Spliceosome [BR:
zof03041
]
Complex B
Other components
Prp19 complex
121985862
Complex C
Prp19-CDC5 complex
121985862
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
U-box type E3
121985862
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
121985862
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_EML
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Beta-prop_Vps41
Beta-prop_DCAF12
Beta-prop_WDR19_1st
U-box
zf-Nse
WDR90_beta-prop_4th
Beta-prop_HPS5
Beta-prop_IFT122_1st
Beta-prop_DCAF4
KNTC1_N
NBCH_WD40
Beta-prop_SPT8
eIF2A
Beta-prop_Nup120_160
PUMA_CC
Motif
Other DBs
NCBI-GeneID:
121985862
NCBI-ProteinID:
XP_042395488
LinkDB
All DBs
Position
1B:complement(155985760..156016243)
Genome browser
AA seq
518 aa
AA seq
DB search
MICAISGEVPEEPVVSNKSGHLFERRLIEHHIASHGKCPVTKEELTMDDLVVVKINKVVK
PRTLQAASIPGLLGMFHSEWDALMLSNFALEQQLYTARQELSHALYQHDAACRVIARLKK
ERDDARMLLAQAERIEANNAIAISDRKRAAVDELGPDQKRIRPGINPIIIAELTECNTLL
SGQRKKRQIPTTLVHVDTLDRYTQVASHPLHKSNKPGILALDIDASKDVIATGGIDSTGV
LFNRTSGQISSTLTGHSKKVTTIKFVPGDELVITGSGDKTVRIWRGSEDGNYDCRHVLRD
HTAEVQAVTVHATNKYLVSVSMDNTWCFYDLSTGSCLTQVGEALSEEGYTSASFHPDGLI
LGTGTAGAKVKIWDVKSQSNVANFDGHIGAVTAVSFSENGYFLATAATDGVKLWDLRKLK
NFRSFSPYDSSTPTNSVEFDFSGSYLAIAGPDIRVYQVANVKLEWNIIKTWPDLSGTGKV
TSLKFGADAKYMAVGSMDRNLRIFGLPWDGSQQISPDH
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atgatctgcgccatctccggcgaagtgccggaggaaccggtagtttccaataaatcggga
catctctttgaaaggcggttgatcgaacaccacattgcgagtcatgggaaatgccccgtc
accaaggaggagctcaccatggacgatctcgttgttgtgaagataaataaagtggtgaaa
ccaagaactctgcaggctgctagcatccctggacttctaggaatgtttcatagtgaatgg
gatgctttgatgctatccaattttgcactggagcaacagttgtacacagcgaggcaagag
ttgagccatgccttgtatcagcatgatgctgcatgccgtgttatagcaagactgaagaag
gaaagagatgatgcaagaatgcttttggctcaggcagagaggatagaagccaataatgca
attgctatcagtgatcgcaaaagagctgcagtggatgagttaggtcctgaccagaagaga
attcgtcctggtattaatcctattatcattgcagaacttactgaatgtaatactttgctt
tctggacaacggaaaaagcgccagattccaacaacactggttcatgttgatacgctggac
agatacactcaggtcgctagtcatccccttcacaagtctaacaagccaggcattcttgct
ctagatatcgatgcttccaaggatgtaattgctactggaggtatagattcaactggtgtt
cttttcaataggacatcaggtcaaatctcatcgacactcactggtcactcaaagaaggtt
accactatcaaatttgtgcccggtgatgaactggttataactggatcaggtgataagaca
gttcgcatttggagagggtctgaagatggaaactatgattgtcgtcatgtcctgagggac
cacactgctgaggtacaagctgtcacagtccatgctacgaataaataccttgtgagtgtt
tctatggataatacttggtgtttctatgacctttctacaggatcctgccttactcaggtt
ggtgaagctttgtcagaggagggctacacttcagcttcatttcatcctgatggtcttatt
ctaggtactggcactgccggagccaaggttaaaatttgggacgtcaagtctcagtcaaat
gttgcaaattttgatgggcatattggtgcagtgactgctgtgtcattttctgagaatggt
tatttccttgcgacggcagctacagatggtgtgaagctttgggatcttaggaagctaaag
aacttcagatccttttctccatatgattcaagcactccaacaaactctgttgaatttgac
ttcagtgggagttatcttgccattgccggccctgatataagagtctaccaagttgccaat
gtgaagctggaatggaacatcatcaagacatggcctgatttatctggaacagggaaagtt
acatccttaaagtttggagctgatgcaaaatacatggcagttggttccatggaccgaaat
cttcgaatatttggactcccatgggatggatcgcagcaaatatccccggatcattga
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integrated database retrieval system
