Zingiber officinale (ginger): 121986000
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Entry
121986000 CDS
T08725
Name
(RefSeq) AMSH-like ubiquitin thioesterase 3
KO
K11866
STAM-binding protein [EC:
3.4.19.12
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
121986000
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
zof01002
]
121986000
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
zof04131
]
121986000
04121 Ubiquitin system [BR:
zof04121
]
121986000
Enzymes [BR:
zof01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
121986000
Peptidases and inhibitors [BR:
zof01002
]
Metallo peptidases
Family M67
121986000
Membrane trafficking [BR:
zof04131
]
Endosome - Lysosome transport
Others
Others
121986000
Ubiquitin system [BR:
zof04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
JAMM
121986000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
JAB
USP8_dimer
Prok-JAB
JIP_LZII
DUF3106
Motif
Other DBs
NCBI-GeneID:
121986000
NCBI-ProteinID:
XP_042395686
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All DBs
Position
5B:130003539..130011753
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AA seq
503 aa
AA seq
DB search
MRPYVRSIDINALAQRVEVDNRISLPFYFRIADNLLKQARIYREEKNIIDLYIILLRYSS
LLCETIPCHHEYQALPLAFKEKLLAVMNELESLKPEVQRRVDELNREHMILNSSQKRIST
SSAPAKTQILSNSHIEQMPVSNTSLSSWRPSNNKIQIVSPNNLQTERSFQKISLGLLHPK
EETLSRHSILGSNGLWGPNARPITGRRVQYPSNSELIQDASSRLIQDVQSSSAVINEGDS
RKNNYDLDSVLSLDDGRWSIAVEESDSIIKTAAQEDFAQLNIRQPSPPPVLAEVQPQLLA
IPPSRVADPRPGPANPSQEETKSFQHLHVPVKMMESFLRLAEKNTFKNLETCGILAGALK
NRMFYVTTLIIPKQESTSDSCQTTDEEEIFNVQDKLSLFPLGWIHTHPTQTCFMSSIDLH
THYSYQIMLPEAIAIVMAPTDTSRTHGIFHLTDPTGVNLIRNCQERGFHPHEEPLDGTPI
YEHSSHVYMNTNMKFDVIDLRSL
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgaggccttacgtgagatcgatcgacatcaacgccctcgctcagagggtggaagtcgac
aaccgcatctcccttcccttctactttcgcatcgccgataatctcctcaagcaggctaga
atttatagggaggagaaaaatatcattgatttgtacatcatacttctcagatattcaagc
ctgttgtgtgagacaattccctgccaccatgaatatcaggcgcttcctcttgcgtttaag
gagaaattgttagctgtaatgaatgaactagaatcgctaaagccagaagttcaacgccga
gttgatgaacttaaccgtgagcatatgatactaaattctagtcagaaaaggatctccact
agttcagctccggctaagacacaaatcctctctaattcacacattgagcagatgcctgta
agtaatacatctttgtcctcatggaggccttctaacaataagattcaaattgtgtcgcca
aacaacttgcagacagagagatcatttcagaaaatatcccttggcctacttcatccaaaa
gaagaaaccttatctaggcactccattttagggtctaatgggctttggggtcccaatgca
agaccaattactggtagaagggtccagtatccaagcaattctgagttaattcaagatgca
agttcaaggctgattcaagatgtgcaatccagttcagctgtgataaatgagggtgattct
agaaagaacaattatgatctggactcagttctgtcccttgatgatggtagatggtctatt
gctgtagaggaatctgattctattatcaaaactgcagctcaggaagattttgctcagttg
aacataaggcaaccatctcctcctccagttctagccgaagtgcaacctcagttgcttgca
attcccccatccagagttgctgatccaagaccaggccctgcaaatccttcacaagaagaa
acaaagtcttttcaacatttgcatgttccagtaaagatgatggaatcatttttgcggcta
gcggaaaagaatactttcaagaacttggaaacctgtggaattcttgcaggtgcattgaaa
aataggatgttttatgtgaccaccttaataatcccaaagcaagaatcaacatctgattcg
tgccaaactactgacgaagaagaaatatttaatgtccaagacaagctctctctgtttcct
cttgggtggattcatactcacccaacgcagacgtgtttcatgtcatcaattgatctccat
actcattattcatatcagattatgttaccagaagcaattgcaattgttatggcgccaaca
gatacatcaagaacacatggtatattccatttgacagatccaacaggtgttaatctgata
cgcaattgtcaagaacgcggattccacccacacgaggagcctcttgatggcactcctatt
tacgaacacagctctcatgtttacatgaataccaatatgaaatttgatgtcatcgatctt
cgtagcttgtga
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