Zingiber officinale (ginger): 121986011
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Entry
121986011 CDS
T08725
Name
(RefSeq) transport inhibitor response 1-like protein Os05g0150500
KO
K14485
transport inhibitor response 1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
121986011
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
121986011
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
121986011
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Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
F-box-like
F-box
Motif
Other DBs
NCBI-GeneID:
121986011
NCBI-ProteinID:
XP_042395703
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Position
5B:complement(130374993..130379189)
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AA seq
580 aa
AA seq
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MVGRFRWAAMFPDEVWEHVFSFLTSDADRNAAALVCRNWNRIERRSRKRVFVGNCYSVAP
TVAVRLFPEVRAAVIKGKPHFADFNLVPSDWGGGAEAWVEAMAEGWPNLEELRFKRMVVS
DDCLDLIARSFKNFKVLSLVSCDGFSTSGLAAIAANCRNLRELNLRESEVEETCLNWISH
FPESCTSLVALDIACLEGEVNASILERLISRCSNIMTLRLNHSVPLERLVGLLQRAPQLM
DLGTGKFSARHNPQLFSRLESAIAGCKNLRNLSGFWEPGLTYLPAVYSICEGLTSLNLNY
ATIQNPELVKLISRCKNLRRLLVMDLIEDSGLVAVASSCKLLQELRVFPSDPYDAAEPVS
LTEQGLVAVSAGCPMLHSVLYFCRQMTNAALLTVAKNRPNLTCFRLCIIEPHTPDYVTQE
PLDTGFSAIVESCKDLRRLSVSGLLTDLVFKSIGASANYLEMLSIAFAGDGDMGLHYILS
GCKNLRKLEIRDCPFGDKPLLQNASKLETMRSLWMSSCSVTLGACRQLARAMPRLNVEVI
NESGRGPLVAQPDNCPVEKLYIYRTIAGPRTDTPQCVWTI
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atggtggggcgctttaggtgggcggctatgttccccgacgaggtgtgggagcacgtattc
tcgttcctgacgtcggacgctgaccgcaacgctgcagcgctcgtctgccgcaactggaac
cggatcgagaggaggtcgcggaaacgggtcttcgtcgggaactgttactcggtggcaccg
acggttgcggtgcggctgttcccggaggtgagagcggccgtgatcaaggggaagccccac
ttcgctgacttcaacctagtgcccagcgactggggaggcggagcagaagcgtgggtggag
gcaatggctgaggggtggccgaacctagaggagctccggttcaagaggatggtggtctct
gatgactgcttggatctcattgccaggtctttcaagaacttcaaggtgctgtctctcgtt
tcctgcgacgggttcagcacgtctggacttgctgcgatcgccgccaactgtaggaatctt
agggagttaaacctacgtgaaagtgaagtggaagaaacttgtctgaactggatcagccat
tttccggagtcatgtacttctttagtagccttggatattgcctgcttagaaggcgaggtg
aatgcctctattcttgaacgcctcattagtagatgttcaaatatcatgaccctcagactc
aaccattctgtgcctctagaaaggcttgttggactcttacagagagctcctcagctaatg
gatcttggaactggcaagttttctgcacgtcataatccacagcttttctctaggcttgag
tcagcaattgcaggatgtaaaaatttgagaaacctttctggtttctgggaacctggactc
acttatcttccagcagtttactcaatttgtgaaggtcttacatcacttaacttgaactat
gctaccattcagaatccagagctcgtaaagctaatcagccggtgcaaaaatctacgacga
ttactggttatggatttaattgaagacagtggccttgttgctgtggcatcatcatgcaag
ctccttcaagaattgcgggtgttcccttctgatccgtatgatgcagcagagccggtctct
cttactgaacaaggtcttgttgctgtctctgctggttgcccgatgctccactctgttctc
tatttttgtcggcagatgacaaatgcagccctccttacggttgcaaagaatcgccctaat
cttacatgctttcgtctttgcatcattgagcctcataccccagattatgtcactcaggag
cccctagatactggcttcagtgcaattgtagaatcctgcaaggatctccgccgactctcc
gtatctggtcttctcactgacctcgtgtttaaatccattggggcctcagcaaattatctt
gagatgctttcaatagcttttgccggtgatggagatatgggtctacattacattctctct
ggttgcaagaacttgaggaagctggagatcagggactgcccatttggtgataagccattg
cttcagaatgcatctaaactggagacaatgcgatccctttggatgtcatcatgctctgtg
acattgggggcatgcagacagcttgcccgggctatgccacggctaaatgtggaggtcatc
aatgagagtgggagaggaccgctggtggcacagcctgataattgcccagtcgagaagctc
tacatctaccgcactattgctggtccaagaactgacaccccgcaatgcgtttggactatt
taa
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