KEGG   Zingiber officinale (ginger): 121986046
Entry
121986046         CDS       T08725                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2-like
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
zof  Zingiber officinale (ginger)
Pathway
zof03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:zof00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    121986046
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:zof03021]
    121986046
Enzymes [BR:zof01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     121986046
Transcription machinery [BR:zof03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     121986046
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 121986046
NCBI-ProteinID: XP_042395753
LinkDB
Position
5B:131380190..131394536
AA seq 1154 aa
MEKESDLWMEKFCKDAARAFFKEWGLLSHQINSYDDFIEHGLQDLFDTLGDVVVEPGYDP
SKKGSEGWRHAAISFGNVRLEKPEFWPESNDVHDTSLKLLPKHARLQNMTYSSQLKVEVR
VQTYVQEKNDKAKSGNDLYIQKRVLGDTKREITIGRLPVMVNSNLCWLKTLDKSDCIFDS
GGYFLIKGMEKTFIAQEQRCLTRLWVVDKPAPTVSYLSEVKQKRIYVKLVEAPKVEGFNG
GRLISFYFFFATMPIWVMFFALGALSDKDVFEMIDLEGCEAGMTDIILATIKDAEEQVEG
FRSIDKACQHIDTLVKNAKFPPTESFDQYVSKYLFPNIAGHRSKALFLGYMVKCLLLSSV
GKRKCDNKDDFRNKRLHLAGELLARELRTHVRHAERRMVKTMQRDLNGDNSLQLIERYWD
ASIITNGLNRAFTTGAWTHPYKKAERSSGIVATLRRTNPLQMISDMRKTRQQVLYAGKAG
DARYPNPSYWGKLCFLSTPDGENCGLVKNLAVTAVVSSKVLQPSVDNLMECGMKKLDEVS
LESMRNMGKVFLNGDWVGVCSDMSSIADRLRCMRRGKQIDPQVEIKIDKHQKEVRIFTDA
GRILRPLLIVKNLKKIRELKGGACSFSYLMEQEIIELIGVEEEEDCQTAWGIKSFFAANE
GSSLKYSHCELDPSFLLGLSCSITPFANHNFARRVLYQAEKHSHQAIGFSTVNPSIRVDT
LSHQLYYPQKPLFRTVVSECLFSTSSSVGRKDTIARPEYYNGQNAIVAVNVHQGFNQEDS
LVMNKSSLDRGMFRTEHFRSYKAEVENKVLSKRLKLKEKVDFGKIDSKKGRVDSLDDDGF
PYVGASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQKVVLAANDEGKNFAVVTLRQVRS
PCLGDKFSSMHGQKGVVGFLETQENFPFTCEGIVPDIVINPHAFPTRQTPGQLLEAALGK
GIACRDSTRYATPFSTASVDDIADQLHRSGFSRWGSERVLNGRTGEMMSSMIFMGPTFYQ
RLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFM
LSDFSQMHICQKCHRAANVILRPVPGGKKIRGPYCNFCQSGENIVRINVPYGAKLLYMEL
FSMGICLKFETELC
NT seq 3465 nt   +upstreamnt  +downstreamnt
atggaaaaggagagtgatttgtggatggaaaaattctgcaaagacgccgcaagggccttc
ttcaaagagtggggtcttcttagccatcagatcaattcctacgacgattttatcgaacat
ggcctccaagatctgtttgacactctcggagacgttgttgtagaaccaggctatgaccca
tccaagaagggatctgaaggctggagacatgcggctatcagtttcggtaatgtcaggctt
gagaagcctgagttttggcctgaaagtaacgatgtgcacgatacctcactgaaattacta
ccgaaacatgctcgccttcagaacatgacatattcttctcagctaaaagttgaagtcaga
gttcagacatatgtgcaagagaaaaatgacaaagccaagtctggcaatgacctatatatt
cagaaaagggtattgggtgacacaaaaagggaaatcaccataggaaggttacctgtcatg
gtcaattcaaacctttgctggctgaagactcttgacaaaagtgattgcatctttgattct
ggtggttactttttaattaaagggatggagaagactttcattgcacaagaacaaagatgt
ttgacaagactctgggtggtagataaacctgctccaacagtttcttatttatcagaagtc
aaacaaaaaagaatatatgtgaaacttgttgaagctcccaaagttgaagggttcaatgga
ggcagacttattagcttctacttcttctttgccacaatgcctatctgggttatgtttttt
gctcttggtgcattatcagataaagatgtttttgaaatgattgatcttgaaggatgcgag
gctggtatgactgacataatattagcaactattaaggatgctgaagaacaagttgagggt
ttccgtagcatagataaggcttgccagcacatagatacactagttaagaatgcaaagttc
cctcctactgaatcctttgatcaatatgtttctaagtatctctttccaaatatcgctggg
cataggtcaaaagctcttttcttaggatatatggttaaatgtctcttactatcttctgtt
ggtaagagaaaatgtgacaacaaagatgattttaggaacaagaggttgcacttagctggt
gaacttctggctagggagttaaggacacatgttagacatgctgagaggcgaatggttaaa
actatgcagagggatctaaatggagataatagtttgcaactaattgagcgttattgggat
gcatctataattacaaatggtcttaatcgggcttttacaactggtgcatggactcatcca
tacaaaaaggctgagaggtcatcaggcatagtggcaacccttagaagaaccaatcctctt
caaatgatttctgacatgagaaaaacacgtcagcaggttttatatgcagggaaggctggt
gatgctagatatccaaatccatcgtactgggggaaattgtgttttttatcaacaccagat
ggggagaactgtgggcttgtaaaaaatttagctgtcacagctgttgttagctctaaagta
ttgcaacctagtgttgataacttgatggaatgtggaatgaaaaaactggatgaagtatct
ctagagtcaatgagaaatatgggtaaagtatttctgaatggtgactgggttggagtttgt
tcagacatgagctcaattgctgatagactcagatgtatgcgtcgtggcaaacaaatcgat
ccccaggttgaaataaaaatagacaaacaccaaaaggaagtccgtatatttactgatgcc
gggagaattctaagacctcttttgattgtaaaaaacttaaagaaaattagggaactgaaa
ggaggagcctgttcgttttcatatctcatggagcaggaaatcatagaactcatcggcgtt
gaggaagaggaagattgccaaactgcatggggaatcaagtctttttttgcagctaatgaa
gggagttctctgaagtactcccattgtgagcttgatccatccttcttattaggcttaagt
tgcagtattactccttttgctaaccacaactttgctagaagagttttgtatcaggctgag
aagcactctcatcaggcaattggcttctccacagtaaatccaagtattagagtcgacact
ctttctcaccaactgtattatcctcagaaacctctttttagaacagtagtatctgagtgc
ctttttagcactagttcttctgttggcagaaaagacaccattgctagaccggaatattac
aatggtcaaaatgctattgtcgcagtcaatgttcaccaagggttcaatcaagaggattca
ttggtcatgaataagtcttctctcgaccgtggaatgttccgtaccgaacacttcaggagt
tacaaagctgaggttgaaaataaggttctttctaaacgtctaaagctgaaggagaaagta
gattttggtaaaattgatagtaaaaaagggcgtgttgatagtctagatgatgatggtttt
ccctatgttggtgcgagcctacaaagtggtgacattgtgattggtaaggtgtcagagtca
ggagaagatcatagtatcaagctaaaacataccgaaaaagggatggtccaaaaagtagtg
cttgctgcaaatgatgaaggaaagaactttgcagttgttactttgagacaggttcgatca
ccttgtttaggggacaaattttctagcatgcatggtcagaaaggtgtcgttggtttcctg
gaaacacaagagaattttcctttcacatgtgaaggcatagttccagacattgtcataaac
cctcatgcttttccaactcggcagactcctggtcagcttcttgaagctgcattgggaaaa
ggaattgcatgtagagattctacaagatatgctacaccgttctcaactgcttcagttgat
gacattgcagatcagttgcacaggtctggcttctctagatggggttccgaaagggttcta
aatggtcggactggtgaaatgatgagctctatgatcttcatgggtcctactttctatcag
cgattaatccatatggctgaagataaggtaaagttcaggaatactggaccagttcaccca
ctgacaaggcaacctgtagcagaccgcaagaggtttggtggagtaaagtttggagagatg
gagcgcgattgtttgcttgcccatggagcagctgccaaccttcatgagcggttgtttatg
ctcagtgacttctctcagatgcatatctgccagaaatgtcaccgtgctgccaatgttatc
ttgcggcctgtgccgggaggcaaaaagatccgtggtccatattgcaatttttgccaatcc
ggagagaacattgtccgaatcaacgtgccttacggtgccaagcttctgtacatggagctt
tttagtatgggaatttgtctcaagttcgagacggagttatgttga

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