KEGG   Zingiber officinale (ginger): 121986256
Entry
121986256         CDS       T08725                                 
Name
(RefSeq) THO complex subunit 4D-like
  KO
K12881  THO complex subunit 4
Organism
zof  Zingiber officinale (ginger)
Pathway
zof03013  Nucleocytoplasmic transport
zof03015  mRNA surveillance pathway
zof03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:zof00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    121986256
  09122 Translation
   03013 Nucleocytoplasmic transport
    121986256
   03015 mRNA surveillance pathway
    121986256
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zof03019]
    121986256
   03041 Spliceosome [BR:zof03041]
    121986256
Messenger RNA biogenesis [BR:zof03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     121986256
    TREX complex
     121986256
Spliceosome [BR:zof03041]
 Complex C
  Other components
   EJC/TREX
    121986256
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    121986256
SSDB
Motif
Pfam: RRM_1 FoP_duplication
Other DBs
NCBI-GeneID: 121986256
NCBI-ProteinID: XP_042396054
LinkDB
Position
5B:complement(136780034..136784669)
AA seq 280 aa
MATSLDMSLDDLIKRSSSQRGRGRWRGRGQGQVQVRSRGGGTFHGRGMGRLNGDFLRVKT
RPSPYKIAKSFSRTKDMTWRRDLFDDSIEAAGTSGVQTGTKLYISNLDYGISNADIRELF
SEVGDLMRCSVHYDGNGRPSGSAEVVYTRRSDAIAALKRYNNVQLDGKPMKVEVIGALGL
PMTPRVNVAGVPYGRGRTVMVTPQVAQGGSRSFNHASGINRGGGFQHGRGRGSFRGSGRG
RGTRATRGRGRGHGHGGQQSFEKSANELDKELESYRLMNR
NT seq 843 nt   +upstreamnt  +downstreamnt
atggctacatctttggatatgtcactggatgatctgataaaaagaagttctagtcaaaga
ggaagagggagatggagagggagaggccaggggcaagttcaagttcgcagccgcggtggt
ggcacttttcatggaaggggaatgggaaggcttaatggagacttcctgagagttaagact
cgcccatcaccctacaaaattgccaagtctttcagtagaacaaaggacatgacatggaga
cgtgacctctttgatgatagcatagaagcagctggcacttcaggagtgcaaacaggcaca
aaactttacatttcaaatctagattatgggatatccaatgcagatataagggagttattt
tccgaagttggtgatctaatgcgctgttctgttcattatgatgggaatggtcgaccaagt
ggttcggctgaggttgtgtacacaaggagaagcgatgcaatagctgctctaaaacgttac
aacaatgtgcagctcgacggaaagcctatgaaagtagaagttattggtgctttaggcttg
cctatgactcctcgtgtgaacgttgcaggtgttccctatggtagggggaggacagttatg
gtaacgccacaagtagctcaaggtggttcgcgttcttttaatcatgcttctgggataaat
cggggtggtggctttcaacatggtcgaggtcgtggaagtttcagaggcagtggccgtggc
cgtggtactagggctacacgtggccgtggtcgaggccatggtcatggagggcagcaaagc
tttgagaagtctgccaatgaattagacaaggagctggaaagttaccgcttaatgaataga
tga

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