Zingiber officinale (ginger): 121986256
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Entry
121986256 CDS
T08725
Name
(RefSeq) THO complex subunit 4D-like
KO
K12881
THO complex subunit 4
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03013
Nucleocytoplasmic transport
zof03015
mRNA surveillance pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121986256
09122 Translation
03013 Nucleocytoplasmic transport
121986256
03015 mRNA surveillance pathway
121986256
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121986256
03041 Spliceosome [BR:
zof03041
]
121986256
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121986256
TREX complex
121986256
Spliceosome [BR:
zof03041
]
Complex C
Other components
EJC/TREX
121986256
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
121986256
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
Motif
Other DBs
NCBI-GeneID:
121986256
NCBI-ProteinID:
XP_042396054
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All DBs
Position
5B:complement(136780034..136784669)
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AA seq
280 aa
AA seq
DB search
MATSLDMSLDDLIKRSSSQRGRGRWRGRGQGQVQVRSRGGGTFHGRGMGRLNGDFLRVKT
RPSPYKIAKSFSRTKDMTWRRDLFDDSIEAAGTSGVQTGTKLYISNLDYGISNADIRELF
SEVGDLMRCSVHYDGNGRPSGSAEVVYTRRSDAIAALKRYNNVQLDGKPMKVEVIGALGL
PMTPRVNVAGVPYGRGRTVMVTPQVAQGGSRSFNHASGINRGGGFQHGRGRGSFRGSGRG
RGTRATRGRGRGHGHGGQQSFEKSANELDKELESYRLMNR
NT seq
843 nt
NT seq
+upstream
nt +downstream
nt
atggctacatctttggatatgtcactggatgatctgataaaaagaagttctagtcaaaga
ggaagagggagatggagagggagaggccaggggcaagttcaagttcgcagccgcggtggt
ggcacttttcatggaaggggaatgggaaggcttaatggagacttcctgagagttaagact
cgcccatcaccctacaaaattgccaagtctttcagtagaacaaaggacatgacatggaga
cgtgacctctttgatgatagcatagaagcagctggcacttcaggagtgcaaacaggcaca
aaactttacatttcaaatctagattatgggatatccaatgcagatataagggagttattt
tccgaagttggtgatctaatgcgctgttctgttcattatgatgggaatggtcgaccaagt
ggttcggctgaggttgtgtacacaaggagaagcgatgcaatagctgctctaaaacgttac
aacaatgtgcagctcgacggaaagcctatgaaagtagaagttattggtgctttaggcttg
cctatgactcctcgtgtgaacgttgcaggtgttccctatggtagggggaggacagttatg
gtaacgccacaagtagctcaaggtggttcgcgttcttttaatcatgcttctgggataaat
cggggtggtggctttcaacatggtcgaggtcgtggaagtttcagaggcagtggccgtggc
cgtggtactagggctacacgtggccgtggtcgaggccatggtcatggagggcagcaaagc
tttgagaagtctgccaatgaattagacaaggagctggaaagttaccgcttaatgaataga
tga
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