Zingiber officinale (ginger): 121986401
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Entry
121986401 CDS
T08725
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121986401
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
121986401
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121986401
Spliceosome [BR:
zof03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
121986401
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
AAA_22
DEAD
AAA_19
PWI
AAA_30
nSTAND3
Cas3-like_C_2
SRP54
AAA_16
AAA_7
ABC_tran
AAA_23
Motif
Other DBs
NCBI-GeneID:
121986401
NCBI-ProteinID:
XP_042396264
LinkDB
All DBs
Position
5B:complement(139744206..139764739)
Genome browser
AA seq
1044 aa
AA seq
DB search
MADESYLKTWVSDKLISLIGYSKSVAVQYVIRLSKESSSPADLVRKLVEFGFSSSTETRS
FADDMYAKVPHKQAGPSNYQRAEKEASQYAKKQRAYKLLDDDDDGDTGTITPATVSSEGK
LDSRQKQFRKKRKIDDDEDNEDRHEGHVQHVQNQTSKIDEDDDDSEEERRRDQEERAQLE
RNIRERDAAGTRKLMEPKLTKEEKEEQIRRSKALEDNDTLELRKVSRQVYLQKRRDQKLL
ELKDEIVDHEYIFEGVKLTEAEERQHRFKKQIYELASEHIEDVDDINEYRMPEAYDQEGG
VNQEKRFAAAIHRYRDPGAGDKMDPFAEQEAWENYQSGKGTLKYGSRNKQAPADYEFVLE
DGIDFIKESIMDGVNFEDEMSSEKPDDSTAKNALQKLQEERQTLPIYPYRDELLQAIHDH
QVMVIVGETGSGKTTQIPQYLHEAGYTKHGLVGCTQPRRVAAMSVAARVSQEMGVKLGHE
VGYSIRFEDCTSEKTILKYMTDGMLLREFLSEPDLASYSVIMVDEAHERTLSTDILFGLV
KDITRFRKDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRFPVTINFTKAPEADYIDAAI
VTVLQIHVTQPPGDILVFLTGQEEIETIDEILKHRTRGLGTKIAELIICPIYANLPTELQ
AKIFEPTPDGARKVVLATNIAETSLTIDGIKYVVDPGFCKIKSYNPRTGMESLLINPISK
ASAMQRAGRSGRTGPGMCFRLYTAYNFQHDLDDNTVPEIQRTNLANVVLTLKSLGINDLV
NFDFMDPPPSEALLKALEQLYALNALNSLGELTKTGRRMAEFPLDPMLSKTIVASEKYKC
SEEAITIASMLSIGNSIFYRPKDKQVHADNARMNFHTGNVGDHIALLNVYNSWKETNYST
QWCYENYIQVRSMKRARDIRDQLEGLLERVEIEPTSNLSDLDAVKKAITSGFFHHSAKLQ
KTGAYKTVKNPQTVHIHPSSGLAEVLPRWVIYHELVLTTKEYMRQVTELKPDWLIEIAPH
YYQMKDVEDASTTKMPRGKGLAAD
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atggcagatgaaagctatttgaagacctgggtctcagacaagctaatttctctgataggt
tactccaaaagtgttgctgtacaatatgttattagattatccaaggagtcatcttctcct
gctgatcttgtgcgtaagcttgtggagtttggtttttcttcatcaacagaaacccgttct
tttgccgatgatatgtatgccaaggttccacataagcaagctggtcctagtaactatcag
agggctgagaaagaagcatctcaatatgcaaagaagcaaagggcttacaaacttctggat
gatgatgatgatggtgacacagggacgataacaccagctactgtatcttctgagggaaag
ttggattctcgtcaaaagcaatttagaaagaagaggaagattgatgatgatgaagataat
gaggatagacatgagggacacgtccaacatgttcaaaaccagacatcaaaaatcgacgaa
gatgatgatgattcagaagaagagaggaggcgagatcaagaagaaagagcacaattagag
aggaatatcagagagcgagatgcagctgggacacgaaagttaatggagccaaaattgaca
aaggaggagaaagaggaacaaattcggaggtcaaaggctcttgaggataatgatactttg
gaattaaggaaagtttcgaggcaagtatatttacagaaaaggagggaccagaagctcttg
gaactcaaggatgagattgttgatcatgaatatatatttgagggtgttaaactgactgaa
gcagaagaaagacaacacaggttcaaaaaacaaatttatgaactcgcatcagagcacata
gaggatgtggatgacatcaatgagtataggatgcctgaggcatatgaccaagaaggaggt
gtaaatcaagagaaaagatttgctgcagctatccatagatacagagatcctggtgctgga
gataagatggacccttttgctgaacaggaagcatgggaaaactatcaaagtgggaaggga
actttaaaatatggttcgaggaacaagcaagctcctgctgactatgagtttgtcttagaa
gatggtattgacttcatcaaggagtccattatggatggagtcaattttgaagatgaaatg
tcttctgagaaacctgatgattcaactgcaaagaatgcattgcaaaaacttcaagaagag
agacagactctgccaatttacccttatagggatgaattgctccaagctattcatgaccat
caggtcatggtcattgttggagaaacaggttccggtaaaacaactcaaataccacagtat
ttacatgaggcgggatatacaaaacacggattggttggttgtactcagccacggcgtgtt
gcagccatgagtgtggctgcaagggtttctcaggagatgggggtcaaacttgggcatgag
gttggatattcaattcgatttgaagattgtacatcagaaaagactattctcaaatatatg
actgatggaatgttgctcagggaattccttagtgaacctgacttggctagctacagtgtt
ataatggttgatgaggcgcatgagcgaactctgtcaacagacatcttgtttggattggta
aaggatataactcgtttccgcaaagatcttaagctccttatatcaagtgcaacactggat
gctgaaaaattcagtgattactttgattctgccccaattttcaagataccaggaagacga
tttcctgtaacaataaatttcacaaaagcaccagaagctgattatatagatgctgccatt
gtcacagtacttcagatacatgtgactcaaccccctggggatattcttgtatttcttaca
ggtcaggaggaaattgaaacgattgatgaaatacttaagcacaggacaaggggtttaggt
acaaagatagcagaactaataatatgccccatttatgcaaaccttcctactgagctccag
gcaaaaatatttgaacctactccagatggtgctcgtaaagttgtgttggctactaacatt
gcagaaacgtcccttacaattgatggcataaagtatgtcgtggatcctggattttgtaaa
ataaaatcatacaatccacgaactggtatggaatcattgttaataaatccaatctcaaaa
gcatcagcgatgcaaagggctggaagatctggacgtactggccctggaatgtgtttccgt
ctttacactgcatataattttcagcatgatctggatgataacactgtaccagaaattcaa
agaacaaaccttgctaatgttgtactgacactgaaaagtctggggatcaatgatttggta
aattttgacttcatggatcctccaccctcagaggcattgctaaaggcccttgaacaactt
tatgctctcaatgcattaaacagccttggtgaattgactaagactggaaggaggatggca
gagtttccactagatcccatgctatcgaaaacgattgttgcttcagagaagtacaagtgc
tctgaagaggctataactattgcctcaatgctttctattggtaattcaatattttatcgt
ccgaaggacaaacaagtgcatgctgataatgctaggatgaattttcatactgggaatgtt
ggggatcatattgccttgcttaatgtttacaattcttggaaggaaactaactactcaacc
cagtggtgctatgagaactatattcaggtccgtagtatgaagcgggcaagggatatcaga
gatcaattggaaggtctcttagaaagggttgagattgaaccaacttcaaacctgagcgac
ctagatgcagtgaagaaggccataacttcaggattcttccaccattcagcaaaactgcaa
aaaactggtgcgtacaaaacagtcaaaaatcctcaaacggtgcatattcatccaagctct
ggtctcgcagaggtgctaccacgctgggtcatttaccatgaacttgtacttacaacgaaa
gagtatatgcgacaggtcacagaattgaaaccggattggttgatagaaattgctccgcat
tattatcagatgaaggatgttgaagatgcctcaacaacgaaaatgcctcgtggaaaaggg
ctagcagcagattaa
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integrated database retrieval system
