Zingiber officinale (ginger): 121986404
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Entry
121986404 CDS
T08725
Name
(RefSeq) probable cyclic nucleotide-gated ion channel 5 isoform X1
KO
K05391
cyclic nucleotide gated channel, plant
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
121986404
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
zof04040
]
121986404
Ion channels [BR:
zof04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
121986404
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GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
121986404
NCBI-ProteinID:
XP_042396275
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Position
5B:139789097..139792859
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AA seq
742 aa
AA seq
DB search
MFDCSYNQDKFIRLEDSSPRVSFASEPERMDKSGFHIQGLGHPSRIPSKSFRKGVIRGSE
GLISIGRSLRSGVSRAVFSEDLKASEKKIFDPQDPFLLKMNGLLVASCILSVAVDALFFY
LPVVDEESNCLGIDRELAATSTTLRTLVDVFYLVRIALQFRTSYIAPSSRVFGRGELVID
PAQIAMRYLSRYFIVDFVAVLPLPQIVVWSHLHGSKNYDVLDTKNSLLSIVMFQYIPRLV
RSIPLTTELGRNGGIFAETAWAGAVYYLLWYMLASHVSHYFCFYEILHTFLSLDSLVIFQ
VVGAFWYLLAVNREDDCWQLACNMTTGCEVHYLYCGNENLDGYSNWQKSSKEVLERHCSA
SDDNTEFNYGIYTQCLTSGVVSSDYFFSKFCYCLWWGLQNLSTLGQGLVTSTYPGEIVFS
IALSIFGLILCALLIGNMQTYLQSLTLRLEEMRVKRRDSEQWMHHRLLPQELQERVRRYD
QYKWLETRGVDEECLVQILPKDLRRDIKRHLCFGLVRRVPLFANMDERLLDAICERLKTS
LYTEHSYIIREGDPVDEMLFIIRGRMESVTTDGGRSGFFNRSILKESDFCGEELLTWALD
PKSGASLPSSTRTVQALTEVEAFALIADELKYVASQFRRLHSRQVQHTFRFYSQQWRTWA
SCFIQVAWRRYSKRKAMELQRREELMGLEDDIAAPSIGATIYVSRFAKNALKGVYRQRSK
SVRDLVVLPKPSEPDFGAEDGE
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atgtttgattgcagttacaatcaggacaaatttataaggttggaggattctagtccaaga
gtatcctttgcttctgaaccagaaagaatggacaaatctgggtttcacattcaggggctt
ggtcacccgtcacgtatcccttcgaaatctttcagaaaaggagtgataagaggatcagaa
gggcttatatcaattggtcgatctctacgttccggtgtttccagagcagtcttctccgaa
gatctcaaggcatctgagaagaaaatatttgatccccaggatccatttcttctcaaaatg
aacgggctgcttgtggcgtcctgcatcttatctgtagcagtggatgcattgttcttctat
ctccctgtagttgatgaagaatccaattgcctcggtattgaccgtgaattagcagcaaca
tcaaccacattgcgaacccttgtcgatgtattctaccttgttcgtattgctcttcagttc
cgcacttcttacattgctccatcatcccgggttttcggtcggggtgagcttgtgattgac
cctgcgcagatagcaatgcggtacttaagccgctacttcatcgttgattttgttgcggtg
ctaccacttcctcagattgtagtttggagtcaccttcatggttcgaagaattatgatgtg
ttggatacaaagaattcattactttccattgtcatgtttcaatatataccaagattggtt
agatctattcctctgacaacagaattgggaaggaatggtggcatctttgccgaaactgcc
tgggctggagcagtttattacctgctttggtatatgcttgctagtcatgtaagtcattac
ttctgcttttatgaaattcttcatacctttcttagtctcgattcactagtcatttttcag
gtagttggtgcattctggtacttgttggcggtcaaccgtgaagatgactgctggcagtta
gcttgcaacatgaccacagggtgtgaagtccactatttgtattgtggtaatgagaatcta
gatggttatagtaactggcagaaatccagcaaagaagtccttgagcggcactgctctgct
tcggacgacaacacagaattcaactatggaatttacacacaatgcttaacctctggagtt
gtttcatccgactactttttctccaagttttgctattgcttgtggtggggcttgcaaaat
cttagtacccttggtcagggtcttgtaacgagtacttatcctggagagatcgtcttctct
atcgcgctttcaatatttgggctcattctatgtgcactactaattggaaacatgcagact
tatcttcagtcactgacactgaggcttgaggagatgagagtgaaaaggcgtgactcggag
cagtggatgcaccatcgtttgctgccacaggaactccaagagcgagttcggcgatacgat
cagtacaaatggctagaaaccagaggagtagatgaagaatgcttggttcagatcctgccc
aaggacctcaggagagacatcaagcgtcacctttgttttggcttggtcaggagggtgcct
ctctttgccaacatggatgagaggttgctcgatgccatatgtgagaggctcaaaacaagc
ctatacacagagcacagttacatcataagagaaggtgatcctgttgacgaaatgctcttc
ataattcgcggtcggatggagagcgtgaccactgatggtggccggagcgggttcttcaac
aggagcatcctcaaggagagtgacttctgcggcgaagagctcttaacatgggctctggat
cccaagtctggagccagccttccatcctccaccaggactgtccaggcattgactgaagtg
gaagcctttgcattgatcgcagatgagttgaagtatgtggcaagccagttcaggaggctc
catagcaggcaggtgcagcacacatttcggttctactcgcagcagtggaggacttgggcc
tcttgcttcatccaggtcgcatggaggcggtactcgaagaggaaggcaatggagctccaa
cgaagggaggagctgatgggtctggaggatgacattgctgcacctagtattggtgcaacc
atttatgtatcccggtttgcgaaaaatgcactgaagggagtttataggcagcggagtaag
agtgtgagggatctggtggtgctgccgaagccttcagagcccgattttggtgcagaggat
ggcgaatga
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