Zingiber officinale (ginger): 121986768
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Entry
121986768 CDS
T08725
Name
(RefSeq) THO complex subunit 4A-like
KO
K12881
THO complex subunit 4
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03013
Nucleocytoplasmic transport
zof03015
mRNA surveillance pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121986768
09122 Translation
03013 Nucleocytoplasmic transport
121986768
03015 mRNA surveillance pathway
121986768
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121986768
03041 Spliceosome [BR:
zof03041
]
121986768
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121986768
TREX complex
121986768
Spliceosome [BR:
zof03041
]
Complex C
Other components
EJC/TREX
121986768
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
121986768
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
121986768
NCBI-ProteinID:
XP_042396642
LinkDB
All DBs
Position
5B:79299061..79299715
Genome browser
AA seq
162 aa
AA seq
DB search
MSGALDMSLDNIIKSSKKTAGDGRGRGHEASGPSRRAPNRTANRSAPYSSGKAPNSVWQH
DMYSTAQAGGFPAPTTRASSIDTGTKLYILNLEFGVSNEDIKFFGYLEPKDEEEASLWSE
ANGVRPAAFRNSMASLSLLEFGNNGREKRSHGREEIKMFSFN
NT seq
489 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcgccctcgacatgtccctcgacaacataatcaaatcaagcaagaagactgcc
ggcgacggacgcgggcggggtcatgaggccagcgggccgtcccgtcgcgcgcccaatcga
acggctaaccgatccgccccttactcctccgggaaggctcccaactcggtgtggcagcac
gacatgtactcgacggcgcaagcaggcggttttcctgctccgacgacaagggcttcctcc
atagatactggcaccaagctgtatatcttgaatttagaattcggagtgtcgaatgaggac
attaagttttttggctatcttgagcctaaggatgaagaggaagcgtccttgtggagcgag
gctaatggagtgaggcctgcagcatttagaaattccatggcatcactctcgttattggag
ttcggaaacaatggtagggagaagagaagtcacgggagagaagagataaaaatgttttca
ttcaattaa
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integrated database retrieval system
