Zingiber officinale (ginger): 121987861
Help
Entry
121987861 CDS
T08725
Name
(RefSeq) tRNase Z TRZ3, mitochondrial-like
KO
K00784
ribonuclease Z [EC:
3.1.26.11
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
zof03016
]
121987861
Enzymes [BR:
zof01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.11 tRNase Z
121987861
Transfer RNA biogenesis [BR:
zof03016
]
Eukaryotic type
3'processing and CCA adding factors
3'processing factors
121987861
Prokaryotic type
121987861
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_4
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
D-Glu_cyclase
Motif
Other DBs
NCBI-GeneID:
121987861
NCBI-ProteinID:
XP_042397512
LinkDB
All DBs
Position
1B:162964989..162976309
Genome browser
AA seq
1008 aa
AA seq
DB search
MLHFSSFKLLFPLPKASFFGSTFARSFFSNPKPPLLKKSHLPLPVLSSSDSRGRSNSGGG
IRRRTSGRGRGQGSGGVLNQRRWASTLSEQRNQGKRPEMEEKKETLEFNKRRAEGRDKID
KPKNLQLKVRKLNPINTICYVQILGTGMDTQDTSPSVLLFFDKQRFIFNAGEGLQRFCTE
HKIKLSKIDHIFFTRVCSETAGGLPGLLLTLAGIGEEGMSVNIWGSSDLNYLVDAMRSFI
PNAAVVHAHSFGEKLKEETKVTSSEFDKFQDPITIIDDEVVRISAITLNPSYSNGSKLKP
GDISVIYACELPEIKGKFDPVKASALGLRPGPKYRELQLGNSVMSDQLDFMVHPSDVLGP
STPGPIILLVDCPTTSHLREVLSADSLNCYYCDLDQQSTANNKIVNCVIHLGPASVTKSA
DYQQWMTRFGNAQHVMAGHELSNMEIPILKSSSRISSQLNYLCPQFFPAPGCWSSRQTDD
LCLQSSGHCQDFSSTPCRSILAENLLKFHLRPYSQLGLDRSAIPAASSHEEFIAQLLAEA
PEVVDISKNISQFWARPAKIKVNAPKDSDRIMVEEPWLNESSSINNVHMERQGRDPSEGN
ILDLNGRCKNDTKNEHDIPPCLENIHREDMEIVLLGTGSSQPSKYRNVSSIFVNLFSKGS
LLLDCGEGTLAQLKRRFGIKGADDAIKGLKCIWISHIHADHHTGLARILALRGQLLKDVA
HKPMLVIGPRPLKRFLDAYSRLEDLDMQFLDCRHTLESSMNIFETSLGSSEDHSPENLDK
DRVSSAAESVALHHFGSSLFAPNSKMQSYWKRPGGPLDTAAALPILMGLKELLSEAGLEA
LYSVPVVHCPQAFGVVLKAAERLNIMGKTIPGWKLVYSGDTRPCQALIDASRDATLLIHE
ATFEDSMEDEAIARNHSTTKEAVGVGTSADAYRVILTHFSQRYPKIPVFDEADMQKTCIA
FDLMTVNLADLPVLPKFLPYLKVLFKKEMVADDESEEVDDSFAYAGTL
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atgctacatttttcaagcttcaagctcctcttccctctccccaaagcttccttctttggt
tccacttttgctaggtccttcttctccaatcccaaaccgccgctcctgaagaagtcacat
ctccctctccctgtcctctccagttcggattccaggggtagaagtaactctggtggaggc
attaggagaaggacctccggtagaggacgtggccaaggcagcggcggagttctcaaccag
aggcggtgggcgagcacgctaagcgaacagagaaaccaggggaaaaggccggagatggag
gagaagaaagaaacgttagagtttaacaagaggcgtgcggaggggagggacaagatcgat
aaaccaaagaaccttcaactgaaggtccggaagttgaatcctattaacacaatttgctac
gttcagatcttgggaactggcatggacacacaagatacttcgccatcagtcttgttgttc
tttgacaaacaaaggttcatcttcaatgctggggagggattgcagaggttctgtacggag
cacaagataaagttatcaaagatagatcatatttttttcacacgtgtctgctcggaaact
gcaggaggacttccaggtcttctgctcactttagctggcataggagaagaaggaatgtca
gtcaacatatgggggtcttctgatcttaattacttagttgatgcaatgcgttcattcata
ccaaatgctgctgtggttcatgcacatagcttcggggaaaaattaaaagaggaaactaag
gtgacaagctctgagtttgacaaatttcaagatccgattaccataattgatgatgaggtt
gtgcgcatatctgcaattaccctgaatccaagctattctaatggatcaaaactgaagcca
ggtgacatctctgtgatttatgcttgtgaactgcctgaaattaaaggcaaatttgatcct
gtaaaagcttcagcacttggactacgacctggaccaaaatatcgtgaactgcagcttggg
aattctgtcatgtcagatcagctcgactttatggttcatcctagtgatgttcttggccca
tcaacccctggtccaatcatacttcttgttgactgccccacaacttctcatcttcgtgaa
gtactttctgcagactctcttaattgttactactgtgatcttgaccagcagtcaactgca
aataacaaaattgtgaattgtgtaattcacctgggtccagcttctgtgacaaaaagtgcc
gattatcaacagtggatgacaagatttggtaatgcacaacacgtcatggctgggcatgaa
ttgagcaatatggaaattcctatcttgaaatctagttcacgaatttcatcacagcttaac
tacttgtgccctcagttctttccagctcctggatgttggtctagtcgtcagactgatgac
ctttgtttacagtctagtgggcattgtcaggatttttcttcaactccttgtagaagcatt
ctggctgagaatttgcttaagttccatttgcgtccatactcgcaactgggattggacaga
tctgcaatcccagccgcatccagtcatgaagaatttattgctcaacttcttgcagaagct
cctgaagtagtggatatttctaagaatattagccagttttgggcaaggcctgcaaaaatt
aaagttaatgctccgaaggatagtgatcgtattatggtggaagagccatggctgaatgaa
agttcttcaattaacaatgttcacatggaaaggcaagggagagatccatctgaggggaat
attcttgacttgaatggcagatgtaagaatgatactaaaaatgaacatgatatcccacct
tgcttggaaaatatacacagggaagacatggaaatagttctcctgggtactggttcatca
caaccatctaagtaccggaatgtcagttctatttttgttaatcttttctcaaaaggaagt
ttgcttcttgattgtggtgaaggaactcttgcacaactcaaaagaaggtttggcataaaa
ggtgctgatgatgctataaaaggtttgaaatgcatatggatttcccatatccatgctgat
catcatactggtttggctagaatactagcactcaggggtcaactattaaaggatgtagcc
cacaagcctatgcttgtgattgggccaagaccattgaagagatttctggatgcatattct
agacttgaagatcttgatatgcaattcttagattgcagacacactttggagtcttcaatg
aatatctttgagacttctcttggttctagtgaggatcactctcctgaaaatttagataaa
gacagagtgagttcagcagcagagagtgtagcactacatcactttggatctagtttattt
gctccgaatagtaaaatgcagagctattggaagagacctggtggtcctcttgacactgct
gctgctctgccaattttaatgggactgaaggaacttctctctgaagcaggtctggaagcc
ttatacagcgtgccagttgtacactgtccacaggcattcggtgtggtgttgaaggccgca
gagaggcttaatattatgggaaaaactattccaggatggaagctagtatattcaggtgat
actagaccatgtcaggcactgatagatgcttcacgtgatgcaacactactgatacatgag
gccacatttgaggatagcatggaagatgaagcgattgcgaggaaccatagcacaacgaag
gaagctgttggagtgggcacatcagcggatgcataccgtgttatcctcacccattttagc
cagagatatccaaaaatcccagtctttgatgaggcagacatgcagaagacatgtattgcg
ttcgatctaatgactgtgaatcttgcggatctacctgtgcttccaaagtttcttccttac
ctcaaagtgttatttaaaaaagaaatggtagctgatgatgaatctgaggaggtcgatgac
tcttttgcgtatgcaggaactttgtag
DBGET
integrated database retrieval system
