KEGG   Zingiber officinale (ginger): 121988410
Entry
121988410         CDS       T08725                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 4-like isoform X1
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
zof  Zingiber officinale (ginger)
Pathway
zof03020  RNA polymerase
zof03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:zof00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    121988410
  09124 Replication and repair
   03420 Nucleotide excision repair
    121988410
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:zof03021]
    121988410
   03400 DNA repair and recombination proteins [BR:zof03400]
    121988410
Transcription machinery [BR:zof03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     121988410
DNA repair and recombination proteins [BR:zof03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      121988410
SSDB
Motif
Pfam: RNA_pol_Rpb4
Other DBs
NCBI-GeneID: 121988410
NCBI-ProteinID: XP_042397760
LinkDB
Position
6B:98726574..98732537
AA seq 245 aa
MADKAGKGSAFPGGNDLGSLKGKSAAALKESHVEIELSDSDGEGFIETPLPSSKGKSSAE
AKSGKKRVSFSSLKTSGNNLFNNSTAGDLGKSSNVGKAGGKGSLPQATPLEPLIAETQLK
LELELPKGARLLMDCEAAEVLQDIHEHMTVLSQDPKIKMPESFSKAFQYSKVNDHYNNAK
AVRQVLETLKLNAVTDGEICLMGNVCPENVDEVYALIPSLKGNIEKNEVALKDAIASLAK
FRTPK
NT seq 738 nt   +upstreamnt  +downstreamnt
atggcggacaaagctggaaagggatctgcctttcctggaggaaatgatctaggatcactc
aaaggtaagagtgctgctgccctcaaggagtcgcatgttgaaattgaattatcagattct
gatggtgaaggttttattgaaacacctcttccaagttccaaaggaaaatcatcagctgag
gctaaatctggcaagaaaagggtctctttttcaagcttaaaaacaagtggtaacaatcta
ttcaataattcaactgcaggagatcttggtaaaagttccaacgttggaaaggctggggga
aaaggaagcttaccacaagcaacaccactcgagcctttgatagcagaaacacaattgaaa
ctcgaactagaacttccaaaaggtgctagattattaatggattgtgaagctgcagaagtt
ttacaagatatccatgaacacatgactgttctatcacaagatcccaagataaaaatgcct
gagtcatttagcaaggcatttcaatattccaaagtcaatgatcattataacaatgccaag
gctgtgcgacaggttttggaaactttgaaactaaatgcagtcactgatggcgagatatgc
ttgatggggaatgtttgtccagagaatgtagatgaagtttatgctttaataccatccttg
aagggaaatatagaaaagaatgaagtggcactcaaagatgccatagctagtctggcaaag
ttccgaacaccaaaataa

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