Zingiber officinale (ginger): 121988645
Help
Entry
121988645 CDS
T08725
Name
(RefSeq) nuclear pore complex protein NUP98A-like isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121988645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121988645
03036 Chromosome and associated proteins [BR:
zof03036
]
121988645
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121988645
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
121988645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin2
Nup98_GLEBS
Motif
Other DBs
NCBI-GeneID:
121988645
NCBI-ProteinID:
XP_042398111
LinkDB
All DBs
Position
6B:104597797..104606027
Genome browser
AA seq
1011 aa
AA seq
DB search
MFGSSSPFGQSSTSPFGAQPMFGQTSSSASNPFAPKPFGSPSPFGTQSGSSIFGGTSTGV
FGQQSTPAFGASSAPAFGSSMPAFGASSTPAFGSASSSFGGSSLFGQKPAFGSFGSSPSQ
SSPFGSTFQQTQPAFGSGLFGSTTPFGQSSQPAFGATTTPAFGSTGTPAFGATSTPAFGA
TTTPAFGSAATSLFGSTGTSFGVSSSPAFGSTATPSFGTPTTSIYGSSSTPAFGASSAPT
FSSPTVSAFGTSNTPFNFSSTPAFGQSTSAFGSTPFGASPSPFGGQSSPFGAQATTPSFG
SPGFGQSAFGAQPGGTRVASYSPTPEADGGTSSQPAGKLESISAMPVYKDKSHEELRWED
YQRGDKGGSNQSGQLAGATNFLAPSQPSPFGATGTFGQSSANPFSSTTPANPFALKSPSF
GSSGFGSTSTSLFSSPFSASSSSPFGSTSTASIFGASSSSTFGSSSSPSLFGGSAAPAFG
SSTSLFGNSLAGSNSAFGSGLAFGNNQASGLFQSSPSPFGQTSTAFGQPTSGTTSAFGSN
LFSTPSTGFGGSLFSSSTPSLFPSSTPVGYNMTPSALTPFQPAPALQTSSTFSFANFGQA
QPASSGGFGGMPNIFTQSTFGQPAAGQANVVMQPVPVANPFGTLPAMPQMSIGRVGSTPS
IQYGISSMPVSDKPIPARTSPLLVPRISSQRRIRLPPRKYSPKTDGPKLPFFADDETPST
PKADALFIPRENPRALVIRPVEEWPPRSTLEKGSISKYGTKSADENAVGMPSAPAYKELD
EGNHDEPVTENGHTRDHSSPTASPSKAIHKANGTTDDDHMQKATDSYVKISGHRAGKAAI
VYEHGPSIEALMPKLRRDDYYTIPRIQELAAKERAEPGFCRRVKDFVVGRHGYGSIKFYG
ETDVRVLDLESIVQFNNREVIVYNDDDKKPPVGQGLNKPAEVTLLNIKCIDKKTGEQLTE
GPRVERYKEMLARKVKEQGAEFIAYDPVKAEWKFKVKHFSRYRFVDMDLMV
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atgttcggttccagcagtccttttggtcaatcttcaactagtccgtttggtgcccagcca
atgtttggtcaaacaagctctagtgctagtaatccatttgcgcctaaaccctttggaagt
ccgagtccttttggcacccagagtgggagttctatttttggaggcacatctactggtgtc
tttggacaacaatcaacacctgcctttggtgcttcatcagctccggcttttgggagttcc
atgcctgcctttggggcatcatcaactcctgcatttggcagtgcttcgtcttcattcggt
ggatcttctttgtttgggcagaagccagcctttggatcatttggttcatctcccagccaa
tcaagtccatttggcagtacgtttcagcaaacacaaccagcatttgggagtggcctcttt
ggttccacaaccccatttggtcaatcaagtcaacctgcatttggtgctactaccactcca
gcttttggctctacaggcaccccagcatttggtgccacaagcactccagcatttggtgcc
acaactacaccagcatttggttcagcagcaacgtccctttttggttccacaggaacttcc
tttggggtttcaagttctccagcgtttggctcaacagcaacaccatcgtttggtactcca
accacctccatttatggttcttcaagtacgccagcatttggtgcatctagtgcccccacg
ttcagctctccaactgtttctgcttttggcacatcaaatactcctttcaattttagttcc
accccagcatttggtcagtcgacatctgcatttggtagtacaccttttggagcatcacca
tctccttttggtggtcagagttccccatttggtgctcaggcaacaacaccatcctttggt
agcccaggttttggacaatcagcttttggggctcaacctggaggaacaagagttgcatca
tatagcccaacacctgaagctgatggtggcactagtagtcagcctgctggcaagctggaa
tccataagtgccatgcctgtgtataaagacaagagccatgaggaattgagatgggaggat
tatcaacgtggtgataaagggggatccaatcaatctggacagcttgctggagcaacaaat
tttttggctccatctcaacccagtccttttggtgctacaggcacatttggtcaatcttct
gcaaaccctttttcttctaccacacctgcgaatccctttgctcttaaatctccaagtttt
ggttcttctggttttggttccacatctacatcacttttcagctccccattctctgcttct
tcatcaagtccgtttggttcaacttctacagcttccatatttggtgcttccagcagttct
acatttggttcaagttcatcaccctcactttttggtgggtcagctgcacctgcttttgga
tcttctacatcactctttggcaattcattggcagggtcaaattctgcttttggatctggc
ctggcatttggcaataatcaagcttctgggctgttccagtcctcaccttcaccttttggg
caaacatcaactgcttttggacagccaactagtggaaccacttctgcttttggatcaaat
ctatttagcactccatctactggttttggtgggagtttattcagcagttcaactccatca
ctctttccttcaagtactccagttggatataatatgactccttcagcactgacacccttc
caaccagctccagcactccagacatcaagcacattctcatttgcaaattttggacaggca
caaccagcctcttctggtggctttggtggtatgcccaacatcttcactcaaagcaccttt
ggacagcctgctgctggccaggccaatgtggtcatgcaaccagttcctgttgcaaacccc
tttgggacacttccggcaatgcctcagatgtcaattggtcgtgtaggctctaccccctca
attcagtatggaatttcgagcatgccggtttctgataagcctattcctgcaaggacttca
ccattactagttccacgaatttcctctcagagaaggattagactgcctccaaggaagtac
tcccctaaaactgatggtccaaagttgccctttttcgctgatgatgaaacaccttctaca
ccaaaggcggatgcacttttcattcccagagagaatcctagggctctggttatacgtcca
gttgaggaatggcctcctcgaagtactctggaaaagggtagtatctccaagtatggaaca
aagtcagctgatgaaaatgctgtaggaatgccttctgctccagcttataaggaacttgat
gaaggtaatcatgatgaacctgtcactgaaaatggacacacgagggatcattctagccca
accgcatcaccctctaaagctatacataaagcgaacggcacaactgatgatgatcatatg
caaaaagctacagactcttatgtgaaaatatccggacacagggcaggcaaggctgcaatt
gtgtatgagcatggtccaagcatagaagcattgatgcccaagctccgccgagatgactac
tatactatacctcggatccaggagttggctgcaaaagagcgtgcagagccaggcttttgc
aggcgcgtcaaagattttgtggtcggccggcatggttacggcagcatcaagttctatggg
gagaccgatgtccgggtgctcgacctggagtcgattgtacaattcaacaaccgtgaagtg
atcgtttacaatgatgacgacaagaagcctccggtcgggcaagggctgaacaagcctgca
gaggtgacactcctcaacatcaaatgcattgacaagaagacaggagagcagttaacagaa
ggtccaagggtggaaaggtacaaggagatgttggcgcggaaggtgaaggagcaaggggcg
gaattcattgcctatgatcctgtcaaggcggagtggaagttcaaggtgaagcactttagc
aggtataggtttgtggacatggatctgatggtttga
DBGET
integrated database retrieval system
