Zingiber officinale (ginger): 121988646
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Entry
121988646 CDS
T08725
Name
(RefSeq) U1 small nuclear ribonucleoprotein A-like isoform X1
KO
K11091
U1 small nuclear ribonucleoprotein A
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121988646
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
121988646
Spliceosome [BR:
zof03041
]
Complex A
U1 snRNP components
U1 snRNP specific factors
121988646
Complex B
121988646
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_YTH1
DUF4523
xRRM
Motif
Other DBs
NCBI-GeneID:
121988646
NCBI-ProteinID:
XP_042398117
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All DBs
Position
6B:104615320..104619846
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AA seq
252 aa
AA seq
DB search
MSTDGGAAGAGSDAPSVPANMTIYINNLNEKIKLDELKKSLRAVFSQFGKILEVLAFKTL
KHKGQAWVIFEDVSSATEALKRMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKR
HDDRAERKKRDPHHDSKQAGAGLNSAYSGAYGAVPPLSQLPYGGGSKSMLPEAPALPNNI
LFVQNLPHETTPMMLQMFFCQYPGFKEVRMVEAKPGIAFVEYGDEMQSTVAMQGLQGFKI
TQNPMLITYAKK
NT seq
759 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccgatggcggcgccgccggtgccggcagtgacgctccgtcagtcccagccaat
atgacaatctacatcaacaatctcaacgagaagattaaactagacgaactcaagaagtcc
ttgcgcgcagttttttctcaatttggcaagatattagaggtccttgcttttaagacattg
aaacacaagggacaggcatgggtaatctttgaggatgtatcatcagctactgaggcactt
aaaaggatgcaaggatttccattctacgacaagcccatgagaattcagtatgcaaagacc
aagtccgacataattgcaaaggctgatggaacatttgtccctcgtgaaagaaggaagaga
catgatgacagagctgaaagaaagaagcgtgacccacaccatgattctaagcaagctggg
gcaggattgaattctgcttattctggtgcctatggagctgtaccacctctttcgcagttg
ccctatggcggagggtccaagtcgatgctaccagaagcaccagccttgccaaacaacatt
ctcttcgttcagaaccttccgcacgagactaccccgatgatgctgcagatgttcttctgc
cagtatccgggtttcaaagaggttaggatggtcgaagcaaagccagggatcgcctttgtg
gagtatggagacgagatgcagtcgacagtggcaatgcaagggcttcagggtttcaagatc
acacagaatcctatgctcatcacctatgccaagaagtag
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