Zingiber officinale (ginger): 121988766
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Entry
121988766 CDS
T08725
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB4-like isoform X1
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03022
Basal transcription factors
zof03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121988766
09124 Replication and repair
03420 Nucleotide excision repair
121988766
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
121988766
03400 DNA repair and recombination proteins [BR:
zof03400
]
121988766
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
121988766
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
121988766
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb4
Motif
Other DBs
NCBI-GeneID:
121988766
NCBI-ProteinID:
XP_042398304
LinkDB
All DBs
Position
6B:107646325..107652428
Genome browser
AA seq
305 aa
AA seq
DB search
MNSASAPSKLYSNDVSLLVVLLDANPFFWASSAAASGDSASQHHPTAVLSFSKLLNHVIP
FLSSLLLLNQFNQVVLITTGVNSCSYIYDSEEGGAESATGKVPAACSKILLRLEEFLTKD
RLLGKGPDKAVASSVSSLLSGSLSLALCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVA
VMNAIFTAQRSMIPIDSCVMGVQHSAFLQQASYITGGVYLKPQHLDGLFQYLSSVFATDL
QSRSFLQLPRPAGVDFRASCFCHKKTIDMGYVCSVCLSIFCKRHKKCSTCGSDFSPSHID
LNAPH
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atgaattccgcgtctgctccttcgaagctctactctaatgatgtcagtctcctcgttgtc
cttcttgatgccaatcccttcttttgggcgtcctcagcggccgccagtggtgactctgcc
tcccagcaccaccccactgccgtcctctccttctccaagcttcttaatcacgttattcca
ttcctcagctcgctcctcctcctgaaccagttcaatcaggttgtcctaatcaccacaggt
gtcaactcctgcagttacatctatgactcagaagaaggtggagcggaatccgcaactggg
aaggtacctgcggcttgctccaaaattcttcttagactggaagagtttctgacaaaggat
cgactcttggggaagggccctgataaggcggtagcctcaagtgtatcttccttgctctct
ggatcgctctcacttgcattgtgttacatacaaaggatcttcaggtctggaactcgacat
ccacaacccaggattttatgcctgcagggttctccagatgggccagaacaatatgttgct
gtaatgaatgcaatattcactgctcagcgttccatgattcctattgattcttgtgtcatg
ggggtccagcattctgcttttttacagcaagcttcatatatcactggtggagtttatttg
aagccacaacatctggatggactctttcagtatctttcttctgtttttgcaacggatctt
caatcacgcagctttctgcaacttcccagacctgcaggagttgattttcgtgcttcatgt
ttttgccacaaaaagactatcgacatgggttatgtatgctcagtttgtttgtcaatattt
tgcaagcgtcacaagaagtgctccacttgtgggtccgatttcagtccgagccatatcgat
ctcaatgcccctcactag
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integrated database retrieval system
