KEGG   Zingiber officinale (ginger): 121989136
Entry
121989136         CDS       T08725                                 
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein A/B-like isoform X1
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
zof  Zingiber officinale (ginger)
Pathway
zof03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:zof00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    121989136
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zof03019]
    121989136
   03041 Spliceosome [BR:zof03041]
    121989136
Messenger RNA biogenesis [BR:zof03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     121989136
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     121989136
Spliceosome [BR:zof03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    121989136
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_PARP14_3 Nup35_RRM_2 OB_RNB
Other DBs
NCBI-GeneID: 121989136
NCBI-ProteinID: XP_042398936
LinkDB
Position
6B:complement(116966025..116970662)
AA seq 444 aa
MLSILQRDNVPTGLPDFERRLSLSSLGFSSSSFNRFQTLAFDLTLSRREVESSNSRSRER
PLLMEIAEGNQNASDEFEGEYYVEEIEEEVEEYEEEVDDDEEELGDRDGGVGRSAVEGEG
VGDRDKSGITPRKRSENVENSGEEMKQADAGSSSAGKIFVGGVAWDTAEETFSNHFSKYG
EITDSVIMMDKNTHMPRGFGFVTFADPSIIDKVLEDEHVIDGRTVEVKRTVPREEMPSKA
GIKTKKIFVGGIPTSLTGDELKEHFSMYGEVVDHQIMFDHATGRSRGFGFVTFKDEESVD
VIISKGKMHDLDGKQVEIKRAEPKRSGGNPRMNERASYDARSGSSSGYRANSYGFGGGRY
DMYYGGGGGGGTSYGYGRGYGYGGVPSFGAGYVANYGGYMYGGGGFNGSNMYGGPGGYGG
WYGSYGSGSGRGGGYGSRYHPYTK
NT seq 1335 nt   +upstreamnt  +downstreamnt
atgttaagtatactccagcgggataacgtaccgactggtcttccagacttcgagcggcgg
ctgagcttgagctcgctagggttttcttcatcttcgtttaatcgtttccaaaccctagcg
tttgatcttactctttctcgacgcgaagtcgaatcctcaaattctaggtcgagggaacgg
cctctacttatggagatcgctgaggggaaccagaacgcttccgacgagttcgagggcgag
tactatgtcgaggagattgaagaagaggtcgaggaatatgaagaagaagtggatgatgat
gaagaagaattgggagaccgagacggaggcgtcggtcgtagtgcggtagaaggagaagga
gttggagatagagataaaagtggaatcacaccgcggaagagatcggaaaatgtggagaac
agtggagaggagatgaagcaagctgatgctggttcctcttcagcgggaaaaatctttgtt
ggcggtgttgcttgggatactgcggaagaaacattcagtaatcatttcagcaagtatggg
gagatcactgattctgtcataatgatggacaagaacacacacatgccaagagggtttggg
tttgtcacatttgctgacccatctattattgacaaggttttggaggatgagcatgtcata
gacgggagaactgtagaagttaaaagaactgttccaagagaagaaatgccttccaaagca
ggaatcaagacaaagaaaatcttcgtgggagggatacccacgtcactaactggagatgag
cttaaggaacacttttccatgtatggtgaagtagttgatcaccaaataatgtttgaccat
gctactggtcgatcaaggggttttggttttgtgaccttcaaagatgaagaatctgttgat
gtaattatttctaagggcaagatgcatgatctcgacggaaaacaagttgaaatcaagcgg
gccgaaccaaagagatcaggtggcaatccgagaatgaacgagagggccagttatgatgct
cgcagtggaagcagcagtggataccgagcaaactcttatggctttggtggtggtcgttat
gacatgtattatggcggcggcggcggcggcggcacaagttatggttatggcagaggctat
ggctatggtggtgttcctagttttggcgctggttacgtagctaactatggtggctacatg
tatggaggtggcggattcaacggcagcaatatgtacggtggcccaggtggctacggtggg
tggtatggtagttatggcagtggcagtggcagaggaggaggttatggaagcagataccac
ccatacaccaaatga

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