Zingiber officinale (ginger): 121989324
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Entry
121989324 CDS
T08725
Name
(RefSeq) vacuolar-sorting protein BRO1-like
KO
K12200
programmed cell death 6-interacting protein
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03250
Viral life cycle - HIV-1
zof03272
Virion - Hepatitis viruses
zof04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
121989324
03272 Virion - Hepatitis viruses
121989324
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
121989324
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
zof04131
]
121989324
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
zof04147
]
121989324
Membrane trafficking [BR:
zof04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT associated proteins
121989324
Exosome [BR:
zof04147
]
Exosomal proteins
Proteins found in most exosomes
121989324
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRO1
ALIX_LYPXL_bnd
iSirtuin
Med29
Motif
Other DBs
NCBI-GeneID:
121989324
NCBI-ProteinID:
XP_042399232
LinkDB
All DBs
Position
6B:complement(123164436..123201128)
Genome browser
AA seq
888 aa
AA seq
DB search
MSYSAASNVLLAVNEKKTTAVDLYHPLRNYIASTFSELDAQDAEDDLQTVRKLRLDLEAG
SSTSLELRRDLLISYLRALASIEPRFPISPDRSHVSSLTFTWFDAFRPNKKAALPSIHLE
KAAVLFNLGSVYSQIAVAADRTSASGLKQACNALQSAAGAFSFLKDRVAAKAVAAGGTID
LSVECTVMLEKLMLAQAQECFFQKVIGDAKPPGLCSKVARQVGIYYEEAYAALNASLLNQ
HFDRTWMSHVQLKAAQFYSEACYQYSLELHEKEEIAEEIARLKIGISALTDAKKSAKGVA
SPSLDAVKKLDTNMNNNLERAVKENDRVYLMRIPAASSLSALPTASLVKPTSLGEVLDAS
EEKFFSKLVPDSHTKAFSKYTDMADNIIRIQLEKLQQGSEITRVKLKELDLPDSILSLEG
NIGLPLDLKEDVEVVQISGGPSGLETEIQQLKDLRRINQELLAQSEELLLKEADTEAQFR
SQFGTRWTRPESNTLTKNIQDKLHRFTVNLKQAADSDARVEREVRDAVEFLAILDHRPIE
FTLPSLARPIISLDGNEDSIVGALKQSLRQLENLGAQRAGLEDMLKEMKMKDNILPKLMA
STVSQEDLFKKEISKYDQICEEISQNINAQEQLLLQIQSENDQFAAMFNLEDYKVARNKS
YKQIAAAVAKYREIKENINEGMKFYVTLQDALMNVKQQCSDFYMTRNTQCRETIEQVQRQ
IAGLNFASEGETSYNFPSRQSNSPSPQPPEPQRTPLLSHPTPNPETPMEQPAHGYSDRYS
FAAQPNHQITSPSLAPPLYNYIAEQPRPGYSHPYPAYATPQPPPYYASGSKYQHPQQVPS
HEYRQPAYPGWHGPYHNAYQQQPGGPGPYPAPPYSVPAPYPQGSHQRP
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtattcggcggcctcgaacgtattgctggcggtgaacgagaagaagacgactgcc
gtcgatctctaccatcctctccgcaactacatcgcctccaccttctccgagctcgacgcc
caggacgccgaagacgacctccaaaccgttcgtaagctccgcctcgacctagaggctgga
tcctctacttcgctggagctccgccgcgacctcctaatttcgtacttgcgcgccctcgcc
tccatcgagcctcgctttcccatctcccccgatcgatcccacgtctcttccctcaccttc
acctggttcgacgccttccggcctaataagaaggccgcgctaccctccatccatctcgag
aaggccgctgttctcttcaatcttggctccgtctacagccaaatcgccgtcgctgccgat
cggacatcagcttctgggcttaagcaggcttgcaacgcgctccagagcgctgcgggagca
ttttcgtttttgaaggatcgtgtcgcggcgaaggcggtggccgctggagggaccatcgat
ctgtcagtggagtgcacagtaatgctggagaagctgatgctggcgcaggctcaggagtgt
ttctttcagaaggttatcggcgacgcaaagcctcctgggctttgctctaaggtcgctagg
caggttggaatctactatgaagaagcttatgcagccctaaatgcttctctactcaatcaa
cactttgatcgcacatggatgtctcatgtgcaactaaaggctgcccaattttattctgag
gcttgctaccaatactcattagagcttcacgagaaggaagagattgcagaggaaatagct
aggctcaagattggtattagtgccctcactgacgcaaagaaatctgccaagggtgttgct
tctccttcacttgacgctgttaagaaactagatacaaatatgaataataatctagagagg
gctgtgaaggagaatgatcgggtctatctcatgcgaatcccagcagctagttctttgtca
gctcttcctacagcttctcttgtgaagcccacttctttgggagaagttttagatgctagt
gaggagaagtttttctcaaaacttgttcctgacagccacacaaaggctttttccaagtac
actgatatggctgacaacatcatccgaatacaactagagaagctacagcaaggaagcgag
ataactagggttaagctcaaggagttggaccttccagattctatactgtcattggaaggt
aatattgggctgcctttggatcttaaagaggatgttgaggtagtacagatcagtggtgga
ccttctgggcttgaaactgagatacaacagctcaaagacttaaggaggattaatcaggag
ctgctggctcagtcagaagagctactactaaaggaagcagacacagaagcacagttcagg
tctcagtttggaacaaggtggactagaccagagtcaaacacgttaacaaagaacatacaa
gacaaattacacaggtttactgtaaatcttaagcaagcagctgatagtgatgcaagagtc
gaacgggaagtaagagatgctgtagagttcctggcaattcttgatcatagaccgattgag
ttcacccttccaagtcttgcgagacctatcatctctttagatggaaatgaagattctata
gttggtgccctcaaacaaagcttgaggcaattagagaatttaggagcacaaagggcaggc
cttgaagatatgctaaaagagatgaagatgaaggataatatactgccaaaactgatggca
agtaccgtatcacaagaggatctgttcaagaaagagatttctaagtatgaccaaatatgt
gaagaaatttcccaaaatattaatgcacaggagcagttactccttcaaattcagtcagaa
aatgatcaatttgctgccatgttcaatctggaagattataaagttgctcggaataagagt
tataaacagatagctgctgctgtggcaaaatatcgtgaaatcaaggagaacatcaatgaa
gggatgaagttttatgttactctacaggatgcacttatgaacgtaaagcagcaatgcagt
gatttctacatgacaaggaatactcagtgcagagagacgatcgagcaggtacagaggcag
atagcaggactcaattttgcatcagaaggggaaacaagctacaatttcccctcccggcaa
tccaacagtccaagtccccaaccacctgaaccacagagaactccacttctttctcatcct
acacctaatccagaaacacctatggaacaaccagcgcatggatattctgatcgttattct
tttgcagcacaacccaatcatcagatcacatcgccttcgctggctccgccactgtacaac
tacatagcagagcaaccaagacctggatattctcatccttaccctgcctatgctacacct
cagccgcctccttactatgcctcaggcagcaagtatcaacatcctcaacaggtcccgagc
catgaatataggcaaccagcttatccaggttggcatggaccataccataatgcatatcaa
cagcaaccaggtggtccaggcccttatcctgccccaccatattctgtgccagctccttat
ccccaagggagccaccagagaccatga
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