Zingiber officinale (ginger): 121989850
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Entry
121989850 CDS
T08725
Name
(RefSeq) nuclear pore complex protein NUP96-like isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121989850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121989850
03036 Chromosome and associated proteins [BR:
zof03036
]
121989850
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121989850
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
121989850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Motif
Other DBs
NCBI-GeneID:
121989850
NCBI-ProteinID:
XP_042400087
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Position
6B:137605262..137623665
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AA seq
1100 aa
AA seq
DB search
MGEWVIETYPHMRNILTDPAAYQHTPPPRYPPRQGYPSPPHPAPPPQNHPVAPQQERAPI
PNRDSNLVRSSQNEAVGGDCRSLMFSKYKKRRMFYNGDVGSLLPTLYSSDYFTKPSIDEL
AALETIDSGYCSRVPDFTIGRVGYGQIKFIGSTDVRWLHLDQIVKFDRNSVVVYTDEADK
PPVGQGLNKAAEVTLTLKLKSLDAHSPELDRFGDILRKRADRQGAVFVSFDLSSGNWTFL
VHHFSRFGLDDEEEEDIVMIDNDSDSTAEVNEFPAHSAGAVLSHSLPAHLGLDPVRMQEL
RALMFSAEEYEDLNGSFQKINSYNKEQLKEDSPVINGKILANTTILHGSSRKGRIQISSS
PIRRPSQALLEYNLNNTDLSPSRDIFLSGHRKGLPLTRLTKVEGFRLEEKHQTPLSGGYS
KNIVDAALFMGRSFRVGWGPNGILVHSGTPVGSPSCGLSSQVNIQKVAMDKTVRDKNNKI
NEELVDLHFSSLMNLHKSVEHETSQLVHDSFKLKLLRVECSRLTLPEICQAYIETIEKAH
EISELSTSNRVFLMHQVSIWALVRVLFSERETNEQSNDDDREGMMLDTKDDSLDMDVEAK
PFARRAEFSFWLQESVCHRVQDEITYLNDSSDLEQILVLLTGRQLDAAVELAAARGDVRL
AILLSQAGGSMVSRSDMAQQLDIWRMNGMDFKFIENDRLKLYELLAGNIQDAFQVSSIDW
KRFLGLIMWYQLPPDTPLSVVFHTYQQLLCEKRAPHPVPVYIDEGPLEEEEVDWNIGDNH
DLAYYVMLLHANEDKNFNQLKTMFSAFSSTYDPLDYHMIWHQRAILEAIGAFSSKDLSIL
DMSFVDQLLCLGLCHWAIYVVLHMPYCDDAPYIQAKLIKQILCQNCEIWSSQENQYQFIE
ELGIPSEWMHEALAIYFEYQGDLPEALEHFLRCFNWKKAHSIFITSVAHHLFLSSQDEEI
WRITSFMEEHKSEISDWDLGAGIYFDFYILRSSLKEGDIMSETDPLGKKNDECRSFFTRL
SESLLIWEIRLPADARLTYAKMSEELCNLLMSIPGLSSTAMVQMSCFDTMLIAPTPEDMR
SSHLQSAVSVFTYFLSEIST
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgggagagtgggtcattgagacctatcctcatatgagaaatatattgaccgaccctgct
gcttatcaacacacaccacctccacgctatcctcccagacaaggttatccaagtcctccc
catccggccccgcctcctcagaatcatccagtagcacctcaacaagaaagggcgccaata
ccgaatcgtgactccaatcttgtcagaagtagtcaaaatgaagcagttggtggtgattgc
cgcagtttgatgttttctaagtataagaaaagaagaatgttctacaatggggatgtaggc
tccttgctacctactttgtactcctcagactattttaccaagccctcaattgacgagttg
gcagcactagagacgattgactcaggttattgtagccgagttcctgatttcactattgga
agagtgggttatggtcaaattaaattcataggaagcactgatgtcagatggttacatttg
gaccagattgtaaaatttgacaggaattcagtggtggtatatactgatgaggctgacaaa
cccccagtgggtcaaggccttaacaaagctgctgaagtaactttgaccctgaaactaaaa
tcattagatgctcattctccggaattagatagattcggtgatatactaaggaaacgtgct
gatagacaaggagccgtctttgtctcatttgatttgtcaagtggcaattggacattccta
gtgcatcatttcagtagatttggattggatgatgaagaagaagaggatattgtcatgatt
gacaacgatagtgattcaaccgcagaggtaaacgaatttcctgcacattctgctggggct
gtgttatctcattcacttccagctcatctgggtcttgatcctgtaagaatgcaagaattg
agggcattgatgttttctgctgaggagtatgaagatcttaatggatcgttccaaaagatt
aatagttacaacaaggaacagttaaaggaggattccccagttatcaatggcaaaatattg
gctaatacaacaatattacatggttcttccaggaagggaaggattcaaattagttcttca
cccattcgaagaccctctcaagccctactggagtacaatctaaataacactgacttgagc
ccatcaagggacatttttctgagtggtcataggaaggggttgccactaactaggctgaca
aaggtagaggggtttagactggaggagaagcaccaaactcctttatctggaggatactct
aagaatatagtagatgctgctttgttcatgggtagatcttttcgagttggatggggaccg
aatggcatacttgttcatagtggtactccagtaggcagtccaagctgtggattatcttct
caagtaaatatacaaaaggttgctatggacaaaactgtgagagataagaacaataaaatc
aatgaggagcttgttgatttgcatttttcttctttgatgaatctccacaagtcggtagaa
catgaaacttcccaattggtgcatgattctttcaaattaaagcttctgcgagttgaatgc
agtcgtttgactcttcctgaaatttgccaggcttatattgagactattgagaaggcacat
gagatttctgagttatctacatctaaccgtgtgttcttgatgcaccaagtatctatttgg
gcattggtaagagttctattttcagagagggaaacaaatgaacagtcaaatgatgatgat
agggaaggaatgatgcttgatacgaaggatgactctcttgacatggacgttgaggcaaaa
cctttcgctcggagagcagaattttctttttggctgcaagagagtgtttgccatcgagtt
caggatgagataacctacttaaatgattctagtgatttggagcagatacttgtactttta
actggacggcagctggatgcagcagttgagcttgctgctgcaagaggagatgtccgacta
gctattttactaagtcaggctggtgggtcaatggtcagtcgttctgacatggcacaacag
ttggatatctggagaatgaatggcatggattttaagtttattgagaatgataggttaaag
ttgtatgagttgcttgcaggtaatatacaagatgcattccaggtttcatccattgactgg
aaaaggtttctagggttgataatgtggtatcaacttcctcctgataccccattgtctgtg
gtatttcatacttatcagcagcttctctgtgaaaaaagagctcctcatcctgtcccagtt
tacattgatgaaggacctcttgaggaagaagaagtggactggaacattggtgataatcat
gaccttgcatattatgttatgcttcttcatgctaatgaagacaagaacttcaaccaactg
aaaaccatgtttagtgcattctcttccacatatgatccacttgactaccacatgatctgg
caccagcgtgccatattggaagctattggtgcatttagttcaaaagatcttagtatactt
gacatgagttttgttgaccagttgctatgtcttgggttgtgccattgggcaatttatgtt
gttctgcacatgccttactgcgatgatgcaccatatatccaggctaagcttattaaacag
attctgtgtcaaaattgtgaaatttggagctctcaagagaatcaatatcagtttattgaa
gaacttggtataccatcagaatggatgcatgaggctctggcaatatacttcgagtatcag
ggagatttgccagaggccctggaacattttcttagatgctttaattggaaaaaagctcac
tcaatcttcattacatcagtggctcatcacttattcctatcatctcaggatgaagagatt
tggagaatcacaagtttcatggaagaacataagtctgaaatttctgactgggacctgggt
gctggaatttattttgatttctacattctaaggagttcattgaaagagggggacatcatg
agtgaaacggaccctcttggaaagaaaaatgatgaatgcagaagcttttttactcgttta
agtgaatctctattgatttgggaaatcagattgcctgctgatgcaaggttaacctacgca
aagatgtcagaagaactgtgtaatctgctgatgtccattcctggtttgagctccacagcg
atggttcagatgagctgctttgacacgatgctcattgctcccactccggaagatatgcga
tccagtcatctgcagagcgcggtttcagtcttcacttattttctatcagagatctcaaca
tga
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