Zingiber officinale (ginger): 121991157
Help
Entry
121991157 CDS
T08725
Name
(RefSeq) endoribonuclease Dicer homolog 3b-like
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
zof03036
]
121991157
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
121991157
microRNA pathway
RISC loading complex
121991157
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
dsrm
Motif
Other DBs
NCBI-GeneID:
121991157
NCBI-ProteinID:
XP_042401110
LinkDB
All DBs
Position
6B:80804010..80809442
Genome browser
AA seq
1026 aa
AA seq
DB search
MARAVALADLLVLPSWKKACCRVSGERQVAGSGRRYADAGVGRGRERRDRFFIPKSIFQL
FEKDGLHGCSLALPPNAAFQKIVGPRTCSSNLAKHLVGLDACKKKLHELGALSDRLLPFH
KDSQETKFAGSNESTTRAGTTKRKELHGMERVRALHGTWAHEPDGITLNAYRIHFVCDQG
KESYSDFVMLLNSSLDDDIASEEIKLYLTPNKIVSSVISPCGKIDLTAEEIEKSKLFQEV
FFNGMFGRLFTGSKGSGLKREFLFGEQKMAWSSSKMYLLLPLEPSSGVTDTGRSIDWMVI
NESISVAEYLKKIYSVDDKSGNATRCSPVACETTCVNSQFIKLANNALPVRCLKDSVVFS
IHDGRIYSVLDVINDVSTDDPFDQIHATKHTQPLLLLKQSHNPDNLLSRSRFKGDCSGEK
IAEKEQVHARMPPELLVHINVSTDILKSFYLLPSIMHRLESLMLACQLRDEIAFHQIQIP
ISLILEAITTERCCESFSLERLEPLGYSLLKYALSCYLFLKYPTKHEGNLTACRSQTIRN
STLHRLGTSRSLQGYIRDNAFDPLLWLAPGQISIHPLPCVCGVDTYNVPIERKYTTEEVS
VVVGVPCDRGHRWMRSKTIADCVEALVGAYYAGGGLTAALSLIKWLGIDITIDKVLVKEA
KISASHSIHHLKVNKIELLESELNYIFSSKGLLLEAITHPSYQELRLDFSSKKELGLGYS
YQRLEFLGDSVLDLLITRHYFLSHKDVGPGVFSNENFAQIATRNNFDKYLQHGSRILSEK
IKEYVTAIANHQCGKDKQMPNGLPKAPKVLADILESIAGAILIDTNFNLHAVCKIFEPLL
SPIITTSQAALCLLKQLKAEDISHDQCTPKRDKEPSISTTTDSLQLTANSRSSGHCCPLK
GNSHPKTNCKSTKAKLDSPDLPITVPIRTEKGGPRTALFNLCKIHRCPKPHFKLKEEKFR
TPIILNGVQTPNFNLFRAIVTLHIPNSKVITVQGQEKTNKKTAQDSAAREVLLELEKQEI
CILKEL
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atggctagagctgttgctcttgctgatttgttggtgttgccgagttggaagaaggcttgc
tgcagagtttcaggagaaaggcaagttgctggttctgggagaagatatgctgatgctggt
gttgggaggggaagagaaagaagggataggttcttcatcccgaaatcaatttttcagtta
ttcgagaaagatggtttacacgggtgttctctggcattgccaccgaatgctgcatttcaa
aaaatagtaggtcctaggacctgcagttcgaacttagcaaaacaccttgtgggtttagat
gcttgcaagaagaagctgcatgaattaggagcgttgagtgatcgtcttcttccttttcat
aaagattctcaggagaccaaatttgctggttctaatgaatccactactcgagcagggaca
actaaaaggaaggagcttcatgggatggaaagggtccgtgcattacatggaacttgggct
catgaacctgatggtatcacattgaatgcgtataggatacattttgtttgtgaccaagga
aaagaaagttactcagattttgtcatgttactcaattcatcacttgatgacgacatagca
agtgaagaaataaagctctacttgacccctaacaaaattgtcagctcagttatttctcct
tgtgggaagatcgacttaactgcagaagagattgaaaaatccaaattattccaagaagtt
ttcttcaatggaatgtttggtaggctttttactggatcaaagggatcaggacttaaaaga
gaattcttatttggagagcaaaaaatggcttggagctcttcgaaaatgtacctacttttg
ccactggaaccttcatcaggtgtaacagatactggtaggagtatagattggatggttatt
aacgagtccatatctgtcgctgagtacttgaaaaagatatattcagtagatgataaatct
ggaaatgcaaccagatgttctccagttgcatgtgaaacaacatgcgtgaattcccagttc
ataaaattggccaacaatgctcttcctgttaggtgcctcaaagattcagtggtcttttct
attcatgatggaagaatctactctgttctggatgtgataaatgatgtttcgacagatgat
ccatttgatcagatacatgcaacgaagcacacacaaccattgttactactgaaacaaagt
cataacccagacaacctactttcaagatcaagatttaaaggtgattgcagtggggaaaag
atagcagagaaagaacaagtacatgcccgcatgcctccagaacttctagttcacataaat
gtatcaactgatatcttgaagtcattttatttgctaccatcaattatgcatcgattggag
tcgttaatgttggcctgtcagcttcgagatgaaattgctttccaccaaattcaaataccg
atctcactgattttggaagcaataaccactgaaagatgttgtgagagtttctctttggag
cgtttggagcctctagggtactcattgctcaaatatgcattgagttgctatctgttttta
aaatatcctacaaagcatgaaggcaatctaactgcctgcagatcacaaacaattcgtaac
tcaacacttcataggttgggaacaagtcgttccttacagggttacatacgagataatgca
tttgatccgttactttggctagctcctggacagatctccatccaccctttaccgtgcgtt
tgtggggtggacacttacaatgtgcctattgaaaggaaatatacgactgaagaggtatct
gttgtggtgggagtaccttgtgatagaggtcacaggtggatgcgctccaagacaattgca
gattgtgttgaagctctagtcggagcatactatgctggtggtggtttaactgcagcactt
tcattaataaagtggctgggaattgatatcacaatcgacaaggtgttagttaaagaagcc
aagattagtgcctctcattcgatccatcatttgaaagttaacaaaatagaattgctggag
tcagaactaaactatatcttttcttccaagggactactactagaagccatcacacatcca
tcatatcaagagttaagacttgacttttcatcaaaaaaagagttaggacttggctacagt
taccagagacttgaatttctaggtgactcagtgctggatttgctaataacaaggcattac
tttctgagccacaaggatgttggtcctggagtatttagtaatgaaaattttgcacaaatt
gctacgagaaataattttgacaaatatcttcagcatggttccaggatactatcagagaaa
attaaagaatatgttaccgcaattgcaaatcatcaatgcggtaaagataagcagatgcct
aatggtcttcccaaggctccgaaggttctggcagatattcttgagagtatagcaggggca
atattaatagacaccaatttcaatctccatgctgtttgcaagatttttgaaccactgctt
tccccaattataactacgtcacaagcagctttatgcttgttgaagcaactgaaggcagaa
gatatctctcatgatcaatgtacacccaaaagggacaaagagccatctatctctactact
actgactcccttcagctaactgcaaattcgagatcatctggacattgttgccctttaaaa
ggaaatagccatccgaagacaaattgcaaatccacaaaggcgaagcttgatagtcctgac
cttccaattactgttccaattcggacggagaaagggggtcctcgcactgctcttttcaat
ctctgcaagatacataggtgcccgaagccccatttcaaattaaaagaagaaaaattcagg
actccaatcatactcaatggggtgcaaacacccaactttaacctctttagagcaattgtg
actctgcacattcctaactctaaagtaatcacagtccaaggccaggaaaaaacaaacaag
aaaacagctcaagattcagcagcgcgggaggtgctgcttgagcttgagaagcaagaaatc
tgcatcctcaaggagttatga
DBGET
integrated database retrieval system
