Zingiber officinale (ginger): 121991931
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Entry
121991931 CDS
T08725
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
121991931
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
zof04131
]
121991931
Membrane trafficking [BR:
zof04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
121991931
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
VPS8_N
TPR_Vps41
Beta-prop_WDR36-Utp21_1st
TPR_VPS8_2
Clathrin
Beta-prop_EML
Beta-prop_RIG_2nd
WD40_CDC20-Fz
Beta-prop_EML_2
ANAPC4_WD40
WDR55
WD40_Gbeta
Beta-prop_HPS5
Beta-prop_WDR3_1st
zf_RING_Vps8
WD40
Beta-prop_WDR5
Beta-prop_THOC3
WD40_Prp19
WD40_WDHD1_1st
zf-RING_Vps41
zf-RING_UBOX
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
121991931
NCBI-ProteinID:
XP_042401949
LinkDB
All DBs
Position
6B:10197516..10210997
Genome browser
AA seq
1964 aa
AA seq
DB search
MTTKAPSSSSSTPRRGVPPMELDLDSFLRSHGGDLFSSSSDDDDDDHDEIDAVHRRTVDE
ILNDSDSSSSSSLSPPSRIPIPAPKTPIPTPDPKPKEEAALVEEASRRTRDSISEGAEEP
STSFDWRRRSRELSASVSLSSLGLRNGASSSSSSSRPLPSYFGGVRLNPKPGAALAAAAA
ASRSVPTPHAIAIKNRRAGIGSVWKDADEGLESAGSEGLDGSEHSGGTFLSENLESGVDE
EEILQSSAEATEEIHSEVDILEPSGPTPAQLETNVVAEELGVHFAAVESCQTPGQLEANE
DVLNLSETSQVPPVAVIPGEDFSMWNDNLPLTDGAAVPHDMVNSNNQVELQVPPTVGDNV
NGDNVPNGGVREEREQVHSGSDIDKLVEERLSQAENSKRAEKKAEKKLRASMKPLEWAEE
LEKRHASSGLHWEEGAAAQPMRLQGIRRGPPAVGYLQIDLDNAITRSISSQQFKRDHGSP
QVVAVHLNYIAVGMSKGTIIVLASKYSAHSADSTDSKMLTFGSHAEKTQISVTSMCFNQQ
GDLLLAGYGNGHLTIWDVQKAIAAKVITGEHAVPVVHTLFLGQDPQVTRQFKAVTGDSRG
LVLLHTASVVPLLNRFSIKTQCLLDGQKTGTVLCASPLQLYDMHGFVSAPSQIHSSASSN
GLSSMVGGVVGGVVGGESGWKLFNEGSPVVEEGVVIFVTHQNALVVRLSPNVEVFDKFPR
PEGVREGSMPYAAWKWTLADDSSLDSSDKVSWLAIAWDRNVQVAQLVKSEMKKYREWNLD
SAAIGIAWLDDKMLVVVTLRGQLCLFTKDGNEIHRTSFIVSGLGIDDVITYNTFFSNTFG
NPEKGFHNSIAVRGATVYILGPMHLIVSRLLPWRERIQVLQRAGDWMGALDMSMRLYDGH
AQGVIDLPRTVVAIREVIMPFLVELILSYVDEVFSYISVAFCNQIEKAGLVEDIKSSDST
LQKEIEDQYARVGGVAVEFCIHISRIDILFDSIFTKFVAVQHGGTFLEILEPYILKDMLG
SLPPEIMQALVEHYSSRGWLQRVEQCVLHMNISSLDFNQVVRLCREHGLYGALIYLFNRG
LDDYRTPLEELICVVKDSSRTDAASIGYRMLVYLKYCFQGLAFPPGHGTISSQRLQSVRE
ELLSFLLEDSKSLTSPVFKSFKASCGICPNLCYLLWLATEATLKVIRCAFLEEGCTQIVD
SMHYKVESNAEDGKEEDFHRIKVQNAMVQSIANTLIDILDLKSVVIKSFVIEDSAEVWPS
KEDLGQILEFIAFLVSYKQATISEKVLKHILRHLTSQDKTSDDPNMKYEVSRPEKQVLTL
LKVAPQVDWNSDDVMHLCIDAHFYQACGLIHEIRGQFVDALDSYMKDQDEPIHAFAFINK
IMLQLKNNNVSFKMAVISRIPELIKLSRECAFFLVIDQFSSETQDILSELRSHPQSLFLF
LKTTLEIHLSGNLKFPVLETLCLSNPPFGEIRETPNNLEEYAERLASFPKLLHQNTIQVN
DELTELFLSLLCQFERNSVLKFLETFDNYRLEQCLHICQEYGVTDAAAFLLERVGDVGSA
LMLMLTGLNEKIDLLVDAVEKKIYEVASSDSLWQFEDIMNLNEVISVSDVLHASISLCQR
NTRRLDTTESESLWFRLLDFYSQPMKWLCAIKPASLNQKHGNPDHMNVLEPMPKWKISHK
TSATILRKLFSQFVGELIEGMAGYMPLPVIMAKLLSDNGNQEFGDFKLTILQMLGTYGYE
RKILGTAKSLIEDDTFYSLSLLKKGVSHAYAPQDFICCICRCTFTKGSTSGIRVFSCGHT
THLQCEFEESKKSESVRCPICLPKKNPRPRNKSFFLENGLVKGSTSSQPSESIFSVQHVH
ESEVMEKPFGLQQISRFEILNNLQKNGKFLRTETLPQLKLSPPAIYHEKIQQRSISVVGE
PSDSAQKIDKPSKLWQLKDLKSRGSLNMFPLRSNIFGPEKNKVR
NT seq
5895 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgaaggctccctcatcgtcgtcgtcgacgcctcggcgaggagttcctcccatg
gagctcgatctcgattccttcctcagatcccacggcggtgacctcttctcctcctccagc
gacgacgatgacgacgaccacgacgaaatcgacgcagttcatcgtcggaccgtcgacgag
attctcaacgattccgattcctcctcttcttcctccctttcccctccttcccggatccca
attcccgcccccaagaccccaattccaacccctgatcccaagcctaaggaggaagctgct
cttgttgaggaagcttcgagacgaactcgagattcgatttccgaaggcgcagaggaacca
tcgacgtcgttcgattggagacggcgatctcgcgagctttctgcttccgtttccctctct
tccttagggctgaggaatggtgcatcttcctcgtcttcttcatctcgtccgcttccctct
tactttggtggtgtcaggcttaaccctaagcctggtgctgctcttgctgctgcggccgcg
gcctcccgcagtgtcccgacgcctcatgcgatagctattaagaataggagggcaggcatt
ggctctgtctggaaagatgcggatgaaggactggagagtgctggttcggaaggactggat
ggatcagagcattccggaggtacctttcttagtgaaaacttggaatctggggtggatgaa
gaggaaattttgcagtcatcagctgaagcaactgaggaaatccatagtgaggttgatata
ttggaaccatctggcccaacacctgcgcaattggaaactaatgtagtagcagaggaacta
ggtgttcattttgctgcagtagaatcttgccaaacccctggacaattggaagctaacgaa
gatgttctcaatctgtcggagactagccaggtaccgccagttgctgtgattcctggtgaa
gatttttcgatgtggaatgataatttgccactgacagacggtgctgctgtcccccatgac
atggttaactctaataatcaagtggaactgcaagttccacctactgttggagataacgtc
aatggggacaatgttcctaatggaggcgtaagagaggagagagaacaagttcatagtggg
agtgacattgataaattagtagaggagcgattgtctcaggcagagaacagtaagagagct
gagaagaaggctgagaaaaagctccgtgcctctatgaagcctcttgaatgggccgaggag
cttgaaaagcggcatgcatcatctggtttacactgggaggaaggggctgctgctcagcca
atgagactacagggcatccgaaggggaccacctgctgttggatacttgcaaatagatctt
gacaatgcaatcactcgttctatttcttcacaacaattcaagcgtgaccatggttccccg
caagtggttgcagttcacttgaattatatagctgtaggcatgtctaaaggaaccattata
gttttagctagcaaatactctgctcactctgctgacagtacagattccaagatgctaacg
tttggttctcatgctgagaaaactcagatatctgtaacgtcaatgtgctttaatcagcaa
ggtgatttactattagctggatatggtaatggtcatttaacaatttgggatgtacagaaa
gcaatagcagcaaaagttatcactggagagcatgcagtgccagttgtccatacactgttt
ttaggacaagatccacaagtcactcgccagtttaaagctgttactggcgattctaggggg
cttgttttattacatacagcttctgttgttcctctgctcaatcgtttctctatcaagaca
caatgtctacttgatggccaaaaaactggaacagtgctgtgtgcttccccccttcaattg
tatgatatgcatggatttgtatctgcaccttctcaaattcattcatcagcatcctccaat
ggccttagcagcatggttggaggtgttgttggaggtgtagttggaggggagagtggatgg
aagctcttcaatgaaggttctccagtggtggaagaaggtgtggtcatatttgtcacccat
caaaatgctttggtggtaagactaagtccgaatgtagaggtgttcgataaatttcctaga
ccagagggtgttcgtgaagggtccatgccttatgctgcatggaaatggacattggcagat
gactcatcactagattcttctgataaagtttcatggcttgcaattgcatgggaccgaaat
gtccaagtggcccagttggtaaaatcagagatgaaaaaatacagggagtggaaccttgat
agtgctgccataggcattgcatggttagatgataagatgctagtggttgttacacttaga
ggacaactttgcttgtttacgaaagatggaaatgagattcatcgtacaagttttattgta
agcggattgggaattgatgatgtaataacttataacacatttttttctaacacctttgga
aatccagagaagggttttcacaattctatagcagtaagaggagctacagtatacatatta
gggccaatgcatcttatagtttcacgtctacttccttggagagagaggattcaagtactg
cagagagcaggtgattggatgggtgcacttgatatgtcaatgaggctttatgatggccat
gcccagggtgtaattgatcttccaagaacagttgttgctataagggaggttataatgcca
tttcttgtggagttaattttatcatacgtggatgaagttttctcatatatttcagttgca
ttttgcaaccaaattgaaaaagccggtctagtggaagatataaagtcatcagacagtacc
cttcagaaagagatagaggatcagtatgctcgtgttggtggtgtagctgtggagttttgc
atacacataagtaggattgacatcttattcgatagtatcttcactaaatttgttgctgtt
cagcatggaggcacatttttggagatcttggagccatacattctgaaagacatgcttgga
tctttaccaccagagatcatgcaagccctagtagagcactatagtagcagaggatggttg
caacgtgttgaacaatgcgtccttcacatgaatatttcttctctggactttaatcaagtt
gtaagattatgtcgtgaacatggtctttatggtgcactgatatatcttttcaatcgaggt
ttagatgactacaggacaccattagaggaacttatatgtgttgtaaaagatagttcaaga
acagacgctgcttctattgggtaccggatgcttgtttatctaaagtattgttttcagggt
ttagcattcccccctggtcatggtacaatatcatctcaacgtttgcaatcagtgagagaa
gaattattaagttttttgttggaggactcaaaatcattaacctctccagtcttcaaaagc
ttcaaggcatcctgtggaatttgcccaaatctatgttatctcctttggttggctactgaa
gcaacccttaaagtcatacgatgtgcttttttagaagaggggtgcactcagatagttgat
tctatgcattataaagttgagagtaatgctgaagacggaaaggaagaggattttcatcgc
ataaaagttcaaaatgcaatggtacagagtattgcaaacacactaatagatattcttgat
ttgaagtcagtggtgataaaatcatttgtaatagaggacagtgctgaagtttggccttca
aaggaggatttgggtcaaatacttgagttcatcgcatttcttgtttcctataagcaagct
actatttcagaaaaggtgctaaaacatattcttagacatttgacatcacaggataagaca
tcagatgatcccaatatgaagtatgaagtttctcgaccagagaaacaggtgctcactttg
cttaaagttgcccctcaggtggactggaattctgatgatgtcatgcatctatgcatagat
gcccatttttatcaggcttgtggcttaatacatgagatcagaggtcaatttgttgatgct
ttagatagttacatgaaggatcaagatgagccaatccatgcttttgctttcattaacaag
attatgttacagctgaaaaataataatgtttcttttaagatggctgtaatttctcgaatt
ccagaacttatcaagctaagcagagaatgcgcgttcttcttggtcattgatcaatttagt
agtgaaactcaggatatcttatcagaattgcgttctcatccacaaagcttgttcctcttc
ttaaaaacaacccttgaaatccatttgtcaggaaaccttaaatttcctgtgcttgaaaca
ctttgtctctcaaacccaccatttggtgagatcagggagacaccaaataatcttgaagaa
tatgctgaacgactagcaagtttcccaaagcttttgcatcagaacacaattcaagtaaat
gatgaactgacagaactgtttttatcgcttttatgccagtttgagcgcaactcagtcttg
aaatttctagaaaccttcgacaattatagacttgagcagtgtctccatatttgtcaagaa
tatggtgtcactgacgctgctgcatttttactagaaagggttggtgatgttggtagtgct
ctaatgcttatgttgactgggcttaatgaaaagatcgatttgcttgttgatgctgtggaa
aagaaaatttatgaggtggcatcaagtgattctttatggcagtttgaagatattatgaac
ctaaatgaggttatctctgtgagtgatgtgttgcatgcttccattagcctatgccaaaga
aatactcggcgtttagacactacagaatctgagtcgctttggtttcggttgcttgacttc
tattctcagccaatgaagtggctctgtgccatcaaaccagcttctttgaatcaaaaacat
ggcaatccagatcacatgaatgtcttggagcccatgcctaaatggaagatttcacataaa
acttctgctactattttgagaaagctgttctcacaatttgtcggggagttaattgaaggg
atggctggatatatgccccttccagttataatggccaaacttctttctgacaatggcaat
caagaatttggtgattttaagttgactatcttgcaaatgcttggaacttacggttacgag
agaaaaattctgggaacagctaaatcattaattgaggatgataccttttatagcttaagc
ttgctgaaaaaaggtgtctctcatgcttatgcccctcaagatttcatttgctgcatttgc
agatgcacatttaccaaaggttcaacttctggaattagagtttttagctgtggtcataca
actcatctgcaatgtgaattcgaggaaagcaaaaaaagtgagtcagttagatgcccaatt
tgcctaccaaaaaaaaatccccgtccacgaaacaaatcatttttcctggagaatggccta
gtaaaaggctctactagctcccaaccatcagagtccatctttagtgttcaacatgttcat
gaatcagaagttatggagaaaccttttggccttcagcaaatctctcggtttgaaattctg
aataatctccagaagaatggtaaattccttaggacagaaactctgcctcagctaaagctc
tcgcctccagctatctaccatgagaagatccagcaaagatccatttctgtggtgggagaa
ccaagtgattccgcacaaaaaattgacaagccaagcaaactatggcagcttaaggaccta
aaatcaaggggatcactgaacatgttccccttgaggtccaacatatttggtcctgagaag
aacaaagtgcgataa
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integrated database retrieval system
