Zingiber officinale (ginger): 121991949
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Entry
121991949 CDS
T08725
Name
(RefSeq) protein PAT1 homolog
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121991949
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121991949
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121991949
mRNA degradation factors
5'-3' decay
Decapping complex
121991949
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
TilS_SCL
Motif
Other DBs
NCBI-GeneID:
121991949
NCBI-ProteinID:
XP_042401972
LinkDB
All DBs
Position
1B:complement(170666169..170676375)
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AA seq
798 aa
AA seq
DB search
MAAINRKNGGMVDTGAGERIGGAGEGVSDTVQFDATQYAFFGSVTEEVELGGLEDEDSVN
DPHFVGIGDDYQFSSLGERLEGQEIESITDIDDLASTFSKLDRGIVEPRITEVLDGRDSF
SRESSSFTGEWVQDPGFSNWQDHHILDAEAGQDGKRWSSHPHPLSGHAPDSRPLYRTSSS
PQQKQLFKPSEPVHLPISSHTSLPPCGEPTQFHHNAFQGVASPSSSGLQVPFSPPNPYLF
SKLRPAAAPGSNQDGYFTQFGPHGLPINSRQQGHWSESPSILSSNVLADPTQNQSHFNNQ
IPSQLVHQQHGMPPNLPSMVRFPSMQTQQFHPSQSSTQMMNTFETTMRLAEFKDPRFRPM
HRGREYFGFAQHPSDIGFHRIDNGWPRFHSKFMTTEELENIARMQHAATHCNDPYTDDYY
HQACLAKKYSGSNLKHYFCPNVTKDLSSRSKSKDDPHPYLQVDALGRLAFSSIRRPRPLL
EVEPKSASADNISDQKSSAKPLDQEPMLAARITIEDGLCLLLDVDDLDRILQFSQLQDGG
SQLKRKREMLLQEVAASFHLVDPLSHSGQSGANLEGDLVFLRLLSLPKGRKLLSRYLELL
TPGSEITRVICMAIFRHLRFLFGVRPLDTSAAESTTKLAKTTAACMHLMDLNSLSACVAA
VVCSSEQPPLRPLGSLAGDGASVIIKSVLDKATVLLTNDNTASNYSISSRHLWQASFNSF
FGLLTKYCHSKFETVMQSLHMQAPAAAVAGSEITKAISREMPVELLRASLPHTNEHQRKL
LLDFAQRTIPSNGGSNGQ
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atggcggctataaatcggaaaaatgggggtatggtggacacaggcgctggtgaacggatt
ggaggggctggtgaaggcgtttcagatacagttcaatttgatgctacacaatatgcattt
tttggaagtgtcacagaagaggttgagttaggtggattagaagatgaagatagtgttaat
gatccccactttgttgggattggtgatgattatcagttttctagcctaggagaaagatta
gagggacaagaaatcgagtcaataactgatattgatgaccttgcaagtacattttcaaag
ttggacagaggtattgttgaaccaaggatcacagaagtacttgatggcagagattctttt
tctagggaaagttcttcgtttactggagagtgggtacaggacccaggcttttcaaattgg
caagatcatcatatattggatgctgaggctggccaggatggtaaaagatggtcatcacat
ccgcatcctctttcaggtcatgctccagattccagacctctctacagaacgtcatcctct
cctcaacagaagcaactatttaaaccaagtgaaccggtccatttaccaatatcttctcat
acatccttacctccatgcggtgaacctacacaattccatcataatgccttccaaggcgtt
gcgtcaccttctagttctggcctccaggtgcctttctctccaccgaatccctaccttttt
tccaaacttcgtccagcagcagcacctggatcaaatcaagatggatattttactcagttt
ggtccacacggacttccaattaatagcaggcaacagggtcactggtcagaatcgcctagt
atactttcatcgaatgtgttggctgatccaacacaaaatcagagtcatttcaacaatcaa
attccttctcaactggtgcatcagcaacatggaatgcccccgaatttgccttcaatggtg
cgattccccagcatgcaaacacaacagttccaccctagtcaatcctcaacacagatgatg
aatacgtttgaaactacgatgaggttggctgagttcaaggacccgagatttagaccaatg
cacaggggaagagagtactttgggtttgctcaacacccttctgatattggcttccatagg
atagataatgggtggccgaggtttcattccaaattcatgacaaccgaagagcttgagaac
attgctagaatgcaacatgctgcgacccactgcaatgacccctacacagatgattactat
caccaagcttgtctagcaaagaaatattcaggatcaaatttgaagcactatttctgccct
aatgtcaccaaagatttatcgtctagatccaagtccaaggatgacccacatccatatctc
caggtggatgcacttggtaggcttgctttctcatcaatccgtagacctcgtcctcttctt
gaggttgaaccaaaatcagcatctgcagataatatttctgaccagaaatcttctgcaaag
cccttagaccaggagcctatgctggctgctaggatcaccattgaggatggtctttgcctt
ttacttgatgtagatgatcttgatcgcatattgcaattcagtcagctgcaagatggtggc
tctcaacttaagagaaaaagagagatgctcctgcaagaagttgcggcatcttttcatcta
gttgatcctctcagtcattccggtcaatctggggcaaacctagagggtgatctagtgttt
cttcgcctactttctcttccaaaaggccgtaagctactctctcggtacctggaacttctt
acccctggaagtgagatcacccgcgtcatctgcatggccatttttcgccacctgaggttt
ctgtttggtgtaaggccattggatacaagtgcagcggaaagcaccaccaaactagcaaaa
accactgctgcatgcatgcatctcatggacttgaactctcttagcgcatgcgtagctgct
gttgtttgttcctcagaacagccacctcttcgtccactaggaagtcttgctggtgatggt
gcttctgtgatcattaaatctgttcttgataaagcaacagtgcttctaacaaatgataac
acagctagcaactatagtatttctagccgccatctctggcaggcatccttcaattccttc
tttggtcttctcacaaagtattgtcacagtaaatttgaaactgtgatgcagtccctccac
atgcaggctccagctgcagcggttgctggatcagaaatcaccaaagctataagtagggag
atgcctgtggagttgttgcgggcgagtcttcctcatacaaatgagcatcagcgaaagctg
ttactagattttgctcagagaacaatcccttctaatggaggaagtaatgggcagtaa
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