Zingiber officinale (ginger): 121992217
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Entry
121992217 CDS
T08725
Name
(RefSeq) zinc finger CCCH domain-containing protein 45-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121992217
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
121992217
03019 Messenger RNA biogenesis [BR:
zof03019
]
121992217
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121992217
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
121992217
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
Torus
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
121992217
NCBI-ProteinID:
XP_042402362
LinkDB
All DBs
Position
6B:complement(21472336..21480077)
Genome browser
AA seq
701 aa
AA seq
DB search
MDDTDGALSFDFEGGLDSAAPASVAPAAAAGHLTTPDPTAAAANAGVAPPIGPADQIGGA
AGNGHGRRSFRQTVCRHWLRGLCMKGEACGFLHQYDKERMPVCRFFRLYGECREQDCVYK
HTNEDIKECNMYKLGFCPNGPDCRYRHLKMPGPPPPIEEVFQKIQHLSSFGYGSSSNRFY
QHRSNNYNQQPDKNHLSSASGLANATVKLIPLESSDAKAPESLVQQPQQQQEQQQQQQQQ
QPPPPPPAAATENQAPGTSNGLSNQPIRTASLLPQGQSRYFIVKSCNRENLEISVQQGVW
ATQRSNEAKLNEAFESTENVILIFSINKTRHFQGCAKMTSRIGGYIGGGNWKYSHGTAHY
GRNFSLKWLKLCELSFNKTHHLRNPYNDNLPVKISRDCQELEPFIGDQLASLLYLEPDSE
LMAMLAAAESKREEEKAKGVGIEEARENPDIVLFEDNEEEEEDESEEEDDNSNQATQGRG
RGRGMMWQPQIPFVRGGRPMLGVRGFPPMMMGADGFGFGDGFSTPDMYGPRIFPPFGGPR
FAGDFSGGMVFPGRPLQPGAVFPMGNLGMMMGPGRPPFMGGMPMGGIGRANRPVGVPPFL
HPPLSNNRAAKRDHRRPANDRYESGSDQGNRGQEMVGTPSGVDDDAGYWQGGDKASDDKY
TAGRSFQNDESESEDEMAPRRSRHTDGKRKHGGSEGEAALN
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atggacgataccgatggagccctcagcttcgactttgagggcggtcttgactctgccgct
cctgcctccgtcgctccggcggcggccgctggacatctgacgacaccagatcctaccgcc
gccgctgcaaacgcgggagtcgctccgcctatcggaccggccgatcagatcggtggcgca
gctggaaatgggcacgggaggcggagcttccggcagactgtctgccggcactggctccgt
ggcttgtgtatgaagggagaggcgtgtggattcctgcaccagtacgacaaggagcggatg
ccggtatgccgcttcttccgcctttacggggagtgtcgcgagcaggactgcgtttacaag
cacacgaatgaagacatcaaggagtgtaatatgtataaacttggtttctgccccaatgga
cctgattgtcgataccgacatttaaagatgcctggtccaccgcctcccattgaagaggtc
ttccagaagatacaacatctgagttcttttggttatggatcttcttcaaacagattttat
cagcacaggagcaacaattataaccaacagccagataagaatcacttgtcatctgctagt
gggttagctaatgcaacggttaaactgattccactggaatcgtcagatgcaaaggcaccg
gaatccctggtacaacagcctcagcagcaacaggaacagcagcagcagcagcaacagcag
cagccaccacctccgcccccagcagcagcaacagagaatcaagccccgggtacttcgaat
ggcttgtcaaatcaacctattagaactgcatctctactccctcagggacaatctaggtat
tttattgtcaaaagttgcaatcgagagaatctggaaatatctgttcagcagggtgtttgg
gcaactcaaagaagtaatgaggctaaacttaatgaggcatttgaatctacagaaaatgtt
attttgatattttcaatcaataaaactcgccattttcagggatgtgctaagatgacttct
aggattggtggttatattggtggagggaattggaaatattctcatggaactgcacattat
ggccgaaacttttcacttaaatggctaaagctatgtgaattgtccttcaataaaactcat
catctcaggaatccatataatgacaacctcccggtgaagattagtcgggactgccaagag
ctggaaccttttattggagaccagttggcctcgctgctttatctggagcctgatagtgaa
ctgatggcaatgctggcggctgcagagtccaagcgggaagaggaaaaggccaagggagtt
ggcatcgaggaggcaagagaaaatcctgacatcgtcctcttcgaggacaatgaggaggag
gaagaggacgaaagtgaggaagaagatgataacagcaaccaagctacacaagggagagga
agaggaagagggatgatgtggcagccacagattccatttgtacgcggaggaaggcctatg
cttggcgtacgaggtttccctccaatgatgatgggggctgatggatttggtttcggtgat
ggcttctctacaccagacatgtatggtcctcgtattttcccaccattcggaggccctcgg
tttgctggtgatttttcaggaggcatggtcttccctggcagacccctgcagccaggggca
gttttcccaatgggcaacctaggaatgatgatgggtcctggtcgaccaccatttatgggc
ggcatgccaatgggtgggattggtcgagctaatcgtcctgtgggagttccaccttttcta
catcctcctttgtcgaataaccgagctgcaaagagggaccacaggagaccagccaatgat
agatatgagagtggatctgatcagggcaacaggggccaggagatggttggaactcccagt
ggagtagatgatgatgcagggtattggcaaggtggcgataaggcttctgatgacaaatac
actgcagggagaagtttccaaaatgatgagagcgagagcgaggatgagatggcaccaagg
cgatctagacataccgatggcaagagaaagcatggcggatccgagggggaagctgcatta
aactag
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