Zingiber officinale (ginger): 121992219
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Entry
121992219 CDS
T08725
Name
(RefSeq) WD repeat-containing protein ATCSA-1-like isoform X1
KO
K10570
DNA excision repair protein ERCC-8
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03420
Nucleotide excision repair
zof04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121992219
09124 Replication and repair
03420 Nucleotide excision repair
121992219
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
121992219
03400 DNA repair and recombination proteins [BR:
zof03400
]
121992219
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
121992219
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
121992219
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_WDHD1_1st
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EML_2
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Beta-prop_IFT122_1st
Beta-prop_EML
NBCH_WD40
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
WD_LRWD1
Beta-prop_WDR35_TULP_N
WDR54
WD40_RFWD3
Motif
Other DBs
NCBI-GeneID:
121992219
NCBI-ProteinID:
XP_042402364
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Position
6B:21458069..21463152
Genome browser
AA seq
322 aa
AA seq
DB search
MAQVVMDFKMPGKVYGTAMSSVAKAHMLIAAGSADVQVRLCDIASGAFTHTLSGHRGGIM
NVEWSTSSEWILMTGGSDGAIRFWDIRRAGCFRILDQSQSQFGRRPPFPERTPTEVVTRT
AAAGSSSVNKLISKKKATLGNGKKQSQAVCKLQNLTTSHTMHRSHPGTASSYSRATAHFG
AVTGLRATRDGLYLLSSGSDSRLRLWDIESGCSISVNFEAMRLQTNKAIQLALSQDSSAV
FIPSMSNVKVYDVLSGLNLQTFYGHYDMVNCCYFNMQDQELYTGSNDRHILVWSPPSSSF
SDMDEEERKRLNLKADEDNWSQ
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atggctcaggtagtcatggattttaagatgcctggaaaggtttatggtacagcaatgtct
tcagtagctaaggcacacatgcttattgctgccgggagtgcagatgttcaagttcggctg
tgcgacattgcttctggggcgttcactcatacattgtctggacatcgtggtggaattatg
aatgtggaatggtctaccagtagtgagtggatattgatgactggtggcagtgatggtgca
atacgtttttgggatatcagacgcgcaggatgcttccgcattttagatcagtcacagtct
cagtttgggagacgacctccatttcctgaaagaacaccaacagaagttgttactagaaca
gctgctgctgggtcatcttctgtaaataaacttatatccaagaagaaggctactcttggt
aatgggaagaagcaatcacaagctgtatgtaaacttcaaaatctaacaacctcacatacg
atgcatagatcccatccgggtacggcgtcaagttacagtcgtgcaacagcccatttcggt
gctgtgactggattaagagcaaccagagatggcctgtatctacttagctctggttcagac
tcgcggttaaggctgtgggatattgaatctggctgcagcatctcagtcaattttgaagca
atgcgcctacagacaaataaagcaattcagctagctctcagccaggattcatctgctgta
tttattccatccatgtcaaatgtgaaggtgtatgacgtgctgtctggcttgaacctacaa
acattttatggtcattacgatatggttaactgttgttacttcaatatgcaggatcaggaa
ctgtacactgggagcaacgatcggcatattcttgtttggtctcctccgagttcttcattt
agtgacatggatgaagaagaaagaaagagactaaatttgaaagcagatgaagataattgg
agccagtaa
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