Zingiber officinale (ginger): 121992236
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Entry
121992236 CDS
T08725
Name
(RefSeq) protein PAT1 homolog
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121992236
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121992236
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121992236
mRNA degradation factors
5'-3' decay
Decapping complex
121992236
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
121992236
NCBI-ProteinID:
XP_042402385
LinkDB
All DBs
Position
6B:complement(22170370..22177202)
Genome browser
AA seq
803 aa
AA seq
DB search
MATIDRKNGGLVDTGVGEWIGGPGDGVSDTIEFDATRYAFFGNSVLEEVELGGLEDEDSV
NDPSFVGIDDDYQYSGLGDILEGERAQSITDIDDLASTFSKMDRGIVEPRRTEVLGGRGS
FSRESSLAPEWVQDPGFWQDHHILDADGAQDGKRWSSHPHPLSGYAPDSRPLYRTSSSPQ
QQQQFKLSEPIQFPISSRTSFPLRGDTSQFHPNPLHQGIISPSSSGLQVPFSPPNPYPFS
QLHPEAAHGSHQDGNFTQFGPPGLLINSRQQGHRSERPNILSSNMLADPTQNQRHFHNQR
HFDNQIASRLVHQQHGMHQILPPMTRYPHMQAQQFRPSQSPPQTMNKFETMMRPTEFRDQ
RFRTMYRGGEYFGFAQHPSDIGIQKMDNAWPRFYSKYMTTEELENIVRVQHAATHSNDPY
VDDYYHQACLAKKYAGSNLKHHFCPNVTKDLSSRPRSKDEPHPYLQVDALGRLSFSSIRR
PRPLLEVEPKSASADNTPDQKSSTKPLEQEPMLAARITIEDGLSLLLDVDDLNRILQFSQ
LQDDGSQLERKREMLLQEVAASFHLVDPLGQSGQSGVILEDDLVFLRLLSLPKGRKLFSR
YLQLLAPGSEITRVIFMAFFRRLRFLFGVMPSDTSAAESTTKLAKTIASCMLLMDLNSLS
ACLAAVVCSSEQPPLRPLGSSAGDGASIIIKSVLDKATMLLTDHNSASNYSISSRNLWQA
SFNSFFGLLTKYCHSKFDSVMQPLHMQAPGAAVVGSEIAKAINHEMPVELLRASLPHTNE
HQRKLLLDFAQRTIPSNGGSNGH
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atggcgactatcgatcggaaaaatgggggtttggtagacacaggcgttggtgaatggatt
ggaggccctggagacggcgtttcagatacaattgaatttgatgctacacgatatgcattt
tttggaaatagtgtattggaagaggttgagttaggtggattagaagatgaagatagtgtt
aatgatcccagctttgttgggattgatgatgattatcaatattctggcctaggagatata
ttagagggagaacgagcccagtcaataactgatattgatgatcttgcgagtactttttca
aagatggacagaggtattgttgagccaaggaggacagaagtacttggtggccgaggttct
ttttctagggaaagttcattggctcctgagtgggtacaggaccctgggttttggcaagat
catcatatattggatgctgatggtgcccaggatggtaaaagatggtcatcgcatcctcac
cctctttctggctatgctccagattccagacctctgtacagaacatcatcctctcctcaa
cagcagcaacaattcaaactgagtgaaccgatccagtttccaatatcttctcgtacatcc
ttccctctacgtggtgacacttcacaattccatccgaatcccttgcaccaaggaatcatc
tcaccttctagttctggcctccaggtgcctttctctccacccaatccctaccctttttcc
caactccatccagaagcagcccatggatcacatcaggatggaaattttactcagtttggg
ccaccgggtctcttgattaatagcaggcaacaaggtcatcggtcagaacgacctaatatc
ctttcatcaaatatgttggctgatccaacacagaatcaacggcatttccataatcaaagg
catttcgacaaccaaattgcttctcgactggtgcatcagcaacatggaatgcatcaaatt
ttgcctccaatgacacgttacccccacatgcaggcacaacagttccgccctagtcaatcg
ccaccccagactatgaataagtttgaaactatgatgaggccgactgagttcagggaccag
agatttagaacaatgtacagaggaggagagtactttgggtttgctcaacacccttctgac
attggcatccagaagatggataatgcatggccgaggttttattctaaatacatgacaacc
gaagagcttgagaacattgtgagggtgcaacacgctgcaactcactccaatgatccctat
gtagacgattactatcaccaagcttgtcttgcaaagaaatacgcaggatcaaatttgaag
caccatttctgccctaatgtgaccaaggatttgtcttctagacccaggtccaaggatgag
ccacatccgtatctccaggtggatgcactcgggagactttctttctcatcaattcgtaga
cctcgtcctcttcttgaggttgaaccaaaatcagcatctgcagataatactcctgaccag
aaatcatccacaaagcccttagagcaggagcctatgttggctgctaggatcaccatcgag
gatggtctctccctgctccttgatgtagatgatctcaatcgcatactacaattcagtcag
ttgcaggacgatggctcccaacttgagagaaaaagagagatgctcctgcaagaagttgct
gcatcttttcatttagttgatccccttggccaatctggtcaatctggggtaattctagag
gatgatctagtgtttcttcgcttgctttctcttccaaaaggccgtaagctattctctagg
taccttcaacttcttgcccccggaagtgagatcactcgtgtcatcttcatggcctttttt
cgccgcctgagatttttgtttggtgttatgccatcagatacaagtgcagctgaaagcacc
accaaacttgcaaagaccattgcttcgtgcatgcttctcatggacttgaactctctcagt
gcatgcctagctgctgttgtttgttcttcagaacagccacctcttcgcccactcggtagt
tctgctggtgatggtgcctctattatcattaaatctgttctcgataaagcgacaatgctt
ctaacagatcataactctgctagcaattatagcatttctagccgcaatctctggcaggca
tcatttaattccttcttcgggcttctcacaaagtactgtcacagtaaatttgatagtgta
atgcagcctctccacatgcaagctccaggagctgctgttgttggatcagaaattgctaaa
gcaataaatcacgagatgcccgtggagttgttgcgagcgagccttccccatactaatgag
catcagcgtaagttgttacttgattttgctcagagaacaatcccctctaatggaggaagc
aacgggcattaa
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