Zingiber officinale (ginger): 121992247
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Entry
121992247 CDS
T08725
Name
(RefSeq) DNA mismatch repair protein PMS1-like isoform X1
KO
K10858
DNA mismatch repair protein PMS2
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03430
Mismatch repair
zof03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
121992247
03460 Fanconi anemia pathway
121992247
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zof03400
]
121992247
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
121992247
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
121992247
NCBI-ProteinID:
XP_042402410
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Position
6B:complement(22451811..22459740)
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AA seq
890 aa
AA seq
DB search
MEKEDVPHLIKPISQEVVHRISSGQVILELRSAVKELLENSLDAGATSIEINLKEYGKEC
FKVVDNGYGISPENFQVVALKHHTSKISIFSDLHCLTTFGFRGEALNSLCMLGDLTVETR
TKNEALGTHLVFDHSGFLTNEKKIARQVGTTVIVEKLFSTLPVRCKEFTRNIRREFGKLI
SLLNAYALIAKGVRLLCTNTTGKNTKSVVLKTSGSSSLKDNIINVFGLNTFQSLDSLNFS
LSEDCKVEGFLSKPQNGSGRTTAYKHYFFVNGRPVDMPKVSKLVNELFRSSSSKQFPIVI
LNFTIPATSYDVNVTPDKRKIFYSDEGALMLSLRAEIEKIYLSRGFSFAVNRIEVLENEK
CDASGEEGPLASSKGLSCEHGDQELSECDPPKNVQVKELNKERIFLCEKRSMPKELDSRS
HEIDESVTPLYHPKQLNDFHKISSKIDAKRRNCAKLARNDKTACLGLIQSSLTNFLSPNK
RKHEDSCNVLSETPLLRNRSCQVRKCSFGNQTIMSEYSESDQCIGDGSPKSSEKVLLEDQ
SPPVPFDREKISFPGECRFRDRGSIEDMHTSADVTMSSYKDLKMKAESISSPIATESFDE
RYDTRKPCSDSKTCSVMQFSMDDLRRKTQFKFTKLPQWKTLHGRIRKTRCYTAAVIKNSQ
PEEEKEKAQCMEAATSELERYFKKEYFGQMQVVGQFNLGFIIGKMDQDLFIIDQHAADEK
YNFEQLSHSTILNLQPLLMPLRLELSPEEEIVASMHMQTIRKSGFRLIEDIHAPPGRRFM
LKAVPFSKSIVFGAEDVKELISILADGQGELGVRCSYKLDTPDSICPSSVRAMLASRACR
TSVMIGDPLTKIEMRKILRNLVDLNSPWNCPHGRPTMRHLVDLTAIHPRS
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaagaggatgttcctcacctcataaagccgattagccaggaggtagtccacaga
atttcttcggggcaagtgattttggagcttcgttcagcagttaaggagttgctggagaat
agcttagatgccggtgcgaccagtattgagataaatctgaaagaatatggaaaagagtgc
ttcaaagtcgtagacaatggctatggcatctcgccagaaaattttcaggttgttgctctt
aaacatcatacgtctaagatatctattttttctgatcttcactgtttgacaacttttggc
ttcagaggagaagcactgaactctctttgtatgttaggagatttgactgttgagacaaga
acaaaaaatgaggcacttggtacacatttggtatttgaccattctggttttctgacaaat
gagaagaaaattgcacgacaggttggaactactgtgattgtcgagaagttattctccacc
ttgccagtgcgatgcaaggaatttactcggaacatacggcgagaatttgggaagcttatt
tctttgctgaatgcatatgctcttattgctaagggcgttcggttgctttgcacaaataca
actggtaaaaatacaaagtctgttgtattgaaaacgtcaggaagtagttcactgaaagat
aatattattaatgtatttggcctgaataccttccagtccttagattcactgaatttcagc
ttatctgaagattgcaaggttgaaggttttctctcgaagcctcaaaatggcagcggtcgc
acaacagcatataaacactacttcttcgtaaatggaagacctgttgatatgccaaaggtc
agcaaacttgttaatgaattattcagatcttcaagttccaaacaatttcctattgtgatc
ttgaattttaccataccagcaacatcatatgatgttaatgtcacccctgataagcgaaaa
attttctattctgatgagggtgcacttatgctctcccttagggcagagattgagaagata
tatctctctcgtgggttcagttttgctgttaataggattgaagtgctcgagaatgaaaaa
tgtgatgcttctggtgaagagggccctttggcatcatccaaaggattatcttgtgaacat
ggtgatcaggaactttcggaatgtgatcctccaaaaaatgtgcaagttaaagagttgaat
aaggaaagaatttttctttgtgaaaaaaggtctatgccaaaagaattggacagtaggtca
catgaaatagatgaatctgtaactcctctttatcaccccaagcagttaaatgattttcac
aagataagctccaaaattgatgctaaacggagaaactgtgctaaacttgcgaggaatgac
aaaactgcttgtctaggtctcattcagtcatctcttacaaattttctttctccaaacaaa
aggaaacatgaggatagttgcaatgttttgtctgagacacctttattgagaaatagatcc
tgccaggtcaggaaatgcagttttggtaatcagactataatgtcagaatactctgaatct
gatcagtgtattggagacggttcacctaaaagtagtgaaaaagtactgctagaggaccaa
tcaccacctgttccttttgatagagaaaaaatctcctttcctggtgaatgtaggtttcgt
gatagaggttctattgaggatatgcatacatctgctgatgtcactatgagttcttacaaa
gatctaaaaatgaaagcagaaagtatatcaagcccaattgcaactgaatcatttgatgaa
agatatgatactcgaaagccttgttctgattcaaaaacttgctctgttatgcaattcagt
atggatgatcttagaagaaagacacaatttaagttcacaaagctgccacaatggaaaaca
ttgcatggacgaatcagaaagacaaggtgctatactgctgcagtgataaagaattctcaa
ccagaagaggagaaggagaaagcacagtgtatggaagcagctaccagcgagttggaaaga
tatttcaagaaagaatattttggtcaaatgcaggtggttgggcaattcaatcttggtttt
ataattggaaagatggatcaagacttgtttatcatcgatcagcatgctgcggatgaaaaa
tataattttgagcagctctcacattcaaccatcttgaacttacagccactacttatgcca
ctgaggttggagttatcaccggaggaggaaattgtagcttctatgcatatgcaaacaatt
agaaaaagtggttttcgattgatagaggatatacatgcccctcctggtcgccgtttcatg
cttaaagctgttccttttagtaaaagcatagtctttggtgctgaagatgtcaaggagcta
atttctattcttgctgatggtcaaggagagttaggtgtaaggtgttcttacaaattggat
actcctgattccatctgtccatcaagtgttcgtgctatgctggcttcaagggcttgccga
acatctgtaatgattggcgatccattgactaaaattgaaatgcggaagattctgaggaac
ttggttgatcttaattcaccatggaattgtccacatggtaggccaacgatgcgtcatttg
gtagacttgactgctattcatccaagatcctag
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