Zingiber officinale (ginger): 121992310
Help
Entry
121992310 CDS
T08725
Name
(RefSeq) structural maintenance of chromosomes protein 5-like
KO
K22803
structural maintenance of chromosomes protein 5
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zof03400
]
121992310
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
SMC5-SMC6 complex
121992310
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMC_N
AAA_23
AAA_21
AAA_29
AAA_15
FKBP15
Fez1
NACHT
AAA_25
AAA_27
ABC_tran
Motif
Other DBs
NCBI-GeneID:
121992310
NCBI-ProteinID:
XP_042402537
LinkDB
All DBs
Position
6B:complement(29070791..29096009)
Genome browser
AA seq
1049 aa
AA seq
DB search
MKERPAKRPKLHQRGEDDFLPGNIVEIEACNFMTYKHLKCQPASRLNLVIGPNGSGKSSL
VCAIALGLAGEPQLLGRASSIGAFVKRGEESGHIKISLRGETELEKIVITRKIDTSNRSE
WAFNGTTVPKRDIIAVIQRFNIQVSNLTQFLPQDRVCEFAKLTPIQLLEETEKAVGNPNL
PVQHHELIEKSVQMKKLEVTVKQNRETLNQLKAMNAEQERDVERVRQRQKLLEYVELMKK
KLPWLKYDLKKVECIEAKKQEAEAKKKMDEAAKVLNDLKIPIEDQKKEKATHELISKKIS
NQISENAKRRAEVFEKESGMGVQVQGKYTEMKELKRQEESHKQRIIKAKEELLAAEKELV
EYPPYEPPTNEIENIGNQILELRISANEVKSQKKEKESILVQKKMILRQYLDRLRSMENN
NNKLLQALQNSGADKIFEAYKWVQEHRRELKKEVYGPVLLEVNVPDMSHATYLENHVPNY
IWKSFITQDPEDRDFLVRNLKSCNVPILNYVENRGTNRMAFQVSNKMRELGICNRLDQVF
DAPDAVKDVLISQAGLEHSYIGTHATDQRADEVSSLDIMDLWTPESHYRWSRSKYGGHIS
ASVDTVYPSRLFSCSVDVSDIEKLKSLKDEIEHAIGGLEENLRVFQARQRQLEDEEANLH
KQRDQMTQTYRLEKKRRTDLERLIVQRRCKLDSISKEDVELGTQKLVDRVIQLNEKRFQL
AINLKTSLMEAVALKWNFTEKHMLSIELDGKIREMEADLKQHEKSAILTATHFSNCQTET
EQCKRQLREAKHHAESIAVITDKLAQEFLKMPGTIEELEAAIQDNISEANSILFLNQNIL
EEYENRQHKIEAIEAKLQMDESELSGCLHEINTLKESWLPMLRNLVAKINETFSMNFQEM
AVAGEVSLDEHGMDFDKYGILIKVKFRQSGQLQVLSAHHQSGGERSVSTILYLVSIQDLT
NCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPELEYTDACSILNV
MNGPWTEKAAKAWSRGGCWRTVIGLAEES
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaacgcccagcgaaacgccctaagctgcaccaaagaggggaggatgacttttta
ccgggtaacattgtcgaaatagaggcctgcaacttcatgacttataaacacctcaagtgc
cagcctgcctcccgcctcaatctagtcataggtcccaatggctccgggaagagttctctc
gtttgtgccattgctctaggactcgcaggagaaccccagcttcttggaagggcttcaagt
attggagcatttgtgaagcggggtgaagaatctggacacataaagatatctttgagagga
gagactgagcttgagaagattgtgatcaccaggaagattgacacgtcaaacaggtccgag
tgggccttcaatggaaccacagtgccaaagagggacattattgcagtcattcaaaggttt
aatatccaagttagcaatttgactcaatttcttccgcaagatcgtgtatgtgaatttgct
aagttgacaccaatacagttgttggaagaaacagaaaaagctgttggtaatcccaatcta
cctgtacagcatcacgaacttatagagaaaagtgtgcaaatgaagaaacttgaagtgact
gttaagcagaatagagagacactaaatcagcttaaggccatgaatgctgagcaagaaaga
gatgtagaacgtgttcgccagaggcagaaacttctcgaatatgttgagttgatgaaaaag
aaactgccatggcttaagtatgacctaaagaaagtggaatgtatagaagcaaaaaagcaa
gaggctgaagctaagaaaaagatggatgaagctgctaaagtcctgaatgatcttaaaata
cctatagaggaccagaagaaagagaaagcaacacatgaattgattagcaagaagatatcc
aaccaaataagtgaaaatgcaaagagacgtgcagaagtttttgagaaagaaagtggaatg
ggggtgcaagtgcaaggaaaatatactgaaatgaaagagctgaaaaggcaggaagaatct
cacaaacagagaatcataaaagcaaaggaagaacttcttgctgctgaaaaggaacttgtg
gagtatccaccttatgaacctccaacgaatgagattgaaaatataggcaatcagatatta
gagctccgcattagtgcgaatgaagtgaagtctcaaaagaaggagaaagagagtatttta
gttcagaagaaaatgatcttgaggcagtaccttgataggttgaggagcatggaaaataac
aacaataaacttcttcaagctctacaaaactcaggtgctgataaaatatttgaagcttac
aaatgggttcaagaacatcgaagagagctgaagaaagaagtatatgggcctgttctgctg
gaggtaaatgttcctgatatgagtcatgcaacctacttggaaaatcatgtgcctaactac
atatggaagtcattcataacacaggatcctgaggatagggatttcctagttaggaatctg
aaatcttgcaatgtcccaattctgaactatgtagaaaatagagggactaacagaatggca
tttcaagtttcaaataagatgcgtgagctaggtatctgcaataggcttgatcaagtgttt
gacgctcctgatgccgttaaagatgttttgattagccaagctggtttggaacactcgtac
attggtacccatgccactgaccaaagggcagatgaggtttcaagccttgacataatggat
ctctggactccagaaagtcattataggtggtccagatcaaagtacggtggccatatttca
gcatctgttgatacagtctacccttcacgacttttctcgtgcagtgtggatgttagtgat
atagagaaactgaaatctttgaaggatgaaattgagcatgccattggaggactggaagag
aacttgagagtgtttcaggcacgccaaaggcaattagaagatgaagaagctaatttgcac
aaacaacgggatcaaatgacccagacttatagacttgagaagaagaggcgcactgatctg
gaacgtcttattgtacaaaggagatgcaaacttgattccatcagcaaagaggatgtggag
ttaggcacacaaaaacttgttgatcgagtcatacagttgaatgagaaacgcttccaactg
gcaattaacttaaaaacttctctgatggaggcagttgctctgaaatggaatttcactgag
aagcacatgctgtccatagagcttgacggaaagatcagagaaatggaggcagatctcaag
caacatgagaaatccgctatcttaactgctacacattttagcaactgtcaaacagaaact
gagcaatgtaaacggcaattacgagaagcaaagcatcatgcagaatctattgcagttatc
actgacaaacttgctcaagaatttctgaagatgccaggtacaatagaggaactggaggcc
gcaattcaagataatatatctgaagcaaactcgattttgtttcttaatcagaatattcta
gaagaatatgaaaatcgccaacacaagatagaagccatagaagctaaacttcagatggat
gaaagcgaattaagtggatgtttgcatgagatcaacacattgaaggaaagttggcttccc
atgttgcggaatcttgttgccaagataaatgaaaccttcagtatgaactttcaagagatg
gctgttgctggagaggtttctctggatgagcatggcatggattttgacaagtatggaata
cttataaaagtcaagttcaggcaatctgggcaacttcaagtgctgagtgctcatcaccag
tctggaggggaacgctcagtttcaaccattctttatctcgtatctattcaagatctcact
aattgccccttccgtgtggttgatgagatcaatcaaggaatggaccctataaatgagagg
aaaatgtttcaacagcttgtcagggcagccagtcagccaaatacgcctcagtgttttttg
ctgacaccaaaattgcttcctgagctggaatacactgatgcttgtagcattctgaatgtg
atgaatggaccctggaccgaaaaagccgctaaagcttggagtcggggtgggtgttggcgt
acagtgattggtttggcagaagaatcttaa
DBGET
integrated database retrieval system
